AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g00949 ATGGAGGACTTGCCGGAGAAGGCAGAAGCGGTGGAGGGGAGTATAGAGAAGGTTATTTATGGTTGTAGATTCTTGACCCTTTTTGGAGTCTGGGGGTCTTTGGTTGGATCAATTCTGTGTTTCATCAAGGGTTGCACTTATGTTGCAATGTCGTTCATGGAGTACTTTGTGAATCACACCAATGTGATTTTGTTGCTGGTTGAGGCTATTGATGTCTATCTTCTAGGAACCGTGATGCTGGTTTTTGGAATGGGTCTCTATGAGCTCTTTGTCAGCAATCTTGACCTTGCAAAGTCACTGCCAGAGGAAAGAAATCAGCAGAGATCCAGTCTCTTTGGCTTATTCACTCTACAGGAACGGCCACAATGGTTAGAGATAAAATCGGTCAATGAGCTGAAAACCAAGCTTGGGCATGTAATAGTGATGCTTCTTCTAATCGGGTTGTTTGAAAAGAGTAAGAAGGCAGCTATACTCACCCCTGTGGATTTGCTATGCTTCGCAGCTTCTATTCTTCTTTCCTCTGTTTGCCTGTATTTACTGTCAAAGCTCCATGGCTCGAAATGA 564 43.79 MEDLPEKAEAVEGSIEKVIYGCRFLTLFGVWGSLVGSILCFIKGCTYVAMSFMEYFVNHTNVILLLVEAIDVYLLGTVMLVFGMGLYELFVSNLDLAKSLPEERNQQRSSLFGLFTLQERPQWLEIKSVNELKTKLGHVIVMLLLIGLFEKSKKAAILTPVDLLCFAASILLSSVCLYLLSKLHGSK* 188
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g00949 187 Pfam Uncharacterized protein family, UPF0114 19 151 IPR005134 -
Vivi2g00949 187 PIRSF UCP026509 4 187 IPR005134 -
Vivi2g00949 187 PANTHER OS06G0710300 PROTEIN 5 186 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g00949 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr13:21697955 Vivi2g00949 Vivi-Chr2:18075928 dispersed
Vivi Vivi-Chr18:9946872 Vivi2g00949 Vivi-Chr2:18075928 dispersed