AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00897 ATGGAACTTCTGCACTCACACAGAGTGGAGGTATTGAGCATAGCCGTTGCTCTTGCAGCCATTGGCGCCGGAACCGCCTATTATTTCTATTTCATCAAAAAACCTAAAGGTTGCTTGGATCCTGAAAACTTCAAGGAGTTCAAACTTATAAAACGCACCCAGCTCAGCCATAATGTGGCTAAATTTATATTTGCTCTTCCAACACCAACTTCAGTGTTGGGACTTCCAATTGGACAACATATGAGTTGCAAGGGAAAGGATAGTCTTGGTGAAGATGTTGTTAAACCATATACTCCAACCACTTTAGATTCAGATCTTGGATACTTTGAACTCGTTATAAAGATGTATCCACAAGGAAGGATGTCCCATCATTTTCGGGAGATGTGTGAAGGTGATTACCTGGCTGTGAAGGGACCTAAGGGGCGCTTCAAGTATCAGCCTGGCCAAGTTATAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAGGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTTATTTATGCCAATGTCACATATGAGGACATTCTTTTAAAGGAAGAGCTGGATAATTTTGCTGCTAACTTTCCAAACCGCTTCACTGTCTATTATGTTCTGAATCAGCCACCTGAAGGATGGAATGGTGGTGTTGGGTTCGTGTCAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAGATATTGAGGTGCGGGCCACCGCCCATGAACAAGGCCATGGCAGGTCACCTTGAGGCTCTTGGATACACTTCCCAAATGCAGTTCAAGTTCTGA 837 44.32 MELLHSHRVEVLSIAVALAAIGAGTAYYFYFIKKPKGCLDPENFKEFKLIKRTQLSHNVAKFIFALPTPTSVLGLPIGQHMSCKGKDSLGEDVVKPYTPTTLDSDLGYFELVIKMYPQGRMSHHFREMCEGDYLAVKGPKGRFKYQPGQVIAFGMLAGGTGITPMFQVTRAILENPSDNTKVHLIYANVTYEDILLKEELDNFAANFPNRFTVYYVLNQPPEGWNGGVGFVSKEMIQTHCPPPATNIQILRCGPPPMNKAMAGHLEALGYTSQMQFKF* 279
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00897 278 CDD cyt-b5-reduct-like 47 278 - -
Vivi6g00897 278 FunFam NADH-cytochrome b5 reductase 37 136 - -
Vivi6g00897 278 Gene3D - 137 278 IPR039261 -
Vivi6g00897 278 Pfam Oxidoreductase NAD-binding domain 155 261 IPR001433 GO:0016491(InterPro)
Vivi6g00897 278 Gene3D Translation factors 37 136 - -
Vivi6g00897 278 FunFam NADH-cytochrome b5 reductase 136 278 - -
Vivi6g00897 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 14 278 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Vivi6g00897 278 PRINTS Cytochrome B5 reductase signature 73 84 - -
Vivi6g00897 278 PRINTS Cytochrome B5 reductase signature 192 203 - -
Vivi6g00897 278 PRINTS Cytochrome B5 reductase signature 95 102 - -
Vivi6g00897 278 PRINTS Cytochrome B5 reductase signature 154 173 - -
Vivi6g00897 278 PRINTS Cytochrome B5 reductase signature 131 145 - -
Vivi6g00897 278 PRINTS Cytochrome B5 reductase signature 248 256 - -
Vivi6g00897 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 248 256 IPR001709 GO:0016491(InterPro)
Vivi6g00897 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 173 IPR001709 GO:0016491(InterPro)
Vivi6g00897 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 192 203 IPR001709 GO:0016491(InterPro)
Vivi6g00897 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491(InterPro)
Vivi6g00897 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 134 272 IPR039261 -
Vivi6g00897 278 SUPERFAMILY Riboflavin synthase domain-like 38 147 IPR017938 -
Vivi6g00897 278 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00897 K00326 cytochrome-b5 reductase [EC:1.6.2.2]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5450425 Vivi Vivi13g00922 Vivi-Chr13:18236830 Vivi6g00897 Vivi-Chr6:13684774
5458873 Vivi Vivi6g00897 Vivi-Chr6:13684774 Vivi8g00084 Vivi-Chr8:1761043
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi18g00325 . 1 98 NADPH P450 reductases gene family AT5G48810 39.796 6.32e-21 87.8
Vivi18g00676 . 6 134 NADPH P450 reductases gene family AT5G48810 49.275 1.10e-40 131.0
Vivi1g00019 . 1 134 NADPH P450 reductases gene family AT1G26340 70.149 1.16e-67 199.0
Vivi11g00440 . 39 281 NADPH P450 reductases gene family AT5G17770 43.295 9.11e-69 214.0
Vivi9g00274 . 28 120 NADPH P450 reductases gene family AT1G60660 68.817 1.66e-46 143.0
Vivi13g00922 . 30 281 NADPH P450 reductases gene family AT5G17770 69.841 5.01e-139 392.0
Vivi7g00751 . 4 134 NADPH P450 reductases gene family AT2G32720 78.626 2.43e-78 226.0
Vivi8g00084 . 31 281 NADPH P450 reductases gene family AT5G17770 82.47 4.54e-161 447.0
Vivi13g01103 . 6 83 NADPH P450 reductases gene family AT1G26340 41.026 9.80e-15 67.0
Vivi6g00897 . 30 281 NADPH P450 reductases gene family AT5G17770 79.365 4.20e-155 432.0
Vivi16g00991 . 1 134 NADPH P450 reductases gene family AT5G53560 79.851 3.11e-80 231.0