Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi6g00917 | ATGGGAAATGCTAATGGCCGAGAGGAGGTAGCCAACATCAGAGACGATCCGACCGCCAGATCCAATGGCGACTCCGGTGTCCGTGACATCTACGCTCCCAACTCCACCCACCCTGCCCGCGTCGCCTCCTCCGATTCAATGGGGAACACGCCTCCTCAGAGCCCCGGACGCTCTCGATCGCCTCTCATGTTCGCTCCTCAGGTTCCAATAGCTCCCCTCCAAAGGAGAGATGGCCCTGCATCTTTGAATCAAATGTGGCAGAATGAACCTCAAGGAGGAGTCGAACATCCTCCTGAGCAAGGAATCCCCATCATGATTGCATGGAACTATGGTGGTAATGATGTGGCTGTGGAAGGATCTTGGGACAACTGGACATCAAGGAAGACACTGCAACGGTCAGGCAAGGATCACTCCATTCTCTTGGTCCTGCCTTCAGGTGTGTACCATTACAAGTTTATTGTGGATGGAGAATGGAGATACATTCCAGATCTTCCTTTCATAGCTGATGAGATGGGACGTGTTTGCAATCTTCTTGATGTCAATGACTATGTGCCAGAGAACCTTGAGAGTGTGGCAGAGTTTGAAGCTCCACCATCACCAAACTCTAGCTACAGTCAAGCATTCCCGGCAGAGGAAGATTTTGCCAAGGAGCCAGTACTAGTTCCACCCCAGCTGCATTTGACTGTCCTTGGTATGCCAAACTCGGAAGAACCTTCCTGTTCAAAGCCTCAACATGTTGTCCTTAACCACCTTTTCATAGAGAAGGGATGGGCTTCTCAGTCTGTGGTTGCTCTGGGTCTTACCAATAGGTTTCAGTCCAAGTATGTCACTGTTGTCCTTTATAAGCCACTGAAAAGGTAA | 861 | 50.17 | MGNANGREEVANIRDDPTARSNGDSGVRDIYAPNSTHPARVASSDSMGNTPPQSPGRSRSPLMFAPQVPIAPLQRRDGPASLNQMWQNEPQGGVEHPPEQGIPIMIAWNYGGNDVAVEGSWDNWTSRKTLQRSGKDHSILLVLPSGVYHYKFIVDGEWRYIPDLPFIADEMGRVCNLLDVNDYVPENLESVAEFEAPPSPNSSYSQAFPAEEDFAKEPVLVPPQLHLTVLGMPNSEEPSCSKPQHVVLNHLFIEKGWASQSVVALGLTNRFQSKYVTVVLYKPLKR* | 287 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi6g00917 | 286 | PANTHER | SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 | 1 | 286 | IPR043554 | - | |
| Vivi6g00917 | 286 | SMART | AMPKBI-2 | 197 | 284 | IPR006828 | GO:0005515(InterPro) | |
| Vivi6g00917 | 286 | SUPERFAMILY | E set domains | 100 | 182 | IPR014756 | - | |
| Vivi6g00917 | 286 | MobiDBLite | consensus disorder prediction | 1 | 99 | - | - | |
| Vivi6g00917 | 286 | MobiDBLite | consensus disorder prediction | 37 | 57 | - | - | |
| Vivi6g00917 | 286 | CDD | E-set-AMPKbeta-like-N | 103 | 180 | - | - | |
| Vivi6g00917 | 286 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 102 | 182 | IPR032640 | - | |
| Vivi6g00917 | 286 | Gene3D | - | 190 | 284 | - | - | |
| Vivi6g00917 | 286 | Pfam | 5'-AMP-activated protein kinase beta subunit, interaction domain | 214 | 283 | IPR006828 | GO:0005515(InterPro) | |
| Vivi6g00917 | 286 | SUPERFAMILY | AMPKBI-like | 184 | 284 | IPR037256 | - | |
| Vivi6g00917 | 286 | Gene3D | Immunoglobulins | 94 | 184 | IPR013783 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi6g00917 | K07199 | 5'-AMP-activated protein kinase, regulatory beta subunit |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Vivi | Vivi-Chr6:14133581 | Vivi6g01064 | Vivi-Chr6:17681979 | dispersed |