AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00917 ATGGGAAATGCTAATGGCCGAGAGGAGGTAGCCAACATCAGAGACGATCCGACCGCCAGATCCAATGGCGACTCCGGTGTCCGTGACATCTACGCTCCCAACTCCACCCACCCTGCCCGCGTCGCCTCCTCCGATTCAATGGGGAACACGCCTCCTCAGAGCCCCGGACGCTCTCGATCGCCTCTCATGTTCGCTCCTCAGGTTCCAATAGCTCCCCTCCAAAGGAGAGATGGCCCTGCATCTTTGAATCAAATGTGGCAGAATGAACCTCAAGGAGGAGTCGAACATCCTCCTGAGCAAGGAATCCCCATCATGATTGCATGGAACTATGGTGGTAATGATGTGGCTGTGGAAGGATCTTGGGACAACTGGACATCAAGGAAGACACTGCAACGGTCAGGCAAGGATCACTCCATTCTCTTGGTCCTGCCTTCAGGTGTGTACCATTACAAGTTTATTGTGGATGGAGAATGGAGATACATTCCAGATCTTCCTTTCATAGCTGATGAGATGGGACGTGTTTGCAATCTTCTTGATGTCAATGACTATGTGCCAGAGAACCTTGAGAGTGTGGCAGAGTTTGAAGCTCCACCATCACCAAACTCTAGCTACAGTCAAGCATTCCCGGCAGAGGAAGATTTTGCCAAGGAGCCAGTACTAGTTCCACCCCAGCTGCATTTGACTGTCCTTGGTATGCCAAACTCGGAAGAACCTTCCTGTTCAAAGCCTCAACATGTTGTCCTTAACCACCTTTTCATAGAGAAGGGATGGGCTTCTCAGTCTGTGGTTGCTCTGGGTCTTACCAATAGGTTTCAGTCCAAGTATGTCACTGTTGTCCTTTATAAGCCACTGAAAAGGTAA 861 50.17 MGNANGREEVANIRDDPTARSNGDSGVRDIYAPNSTHPARVASSDSMGNTPPQSPGRSRSPLMFAPQVPIAPLQRRDGPASLNQMWQNEPQGGVEHPPEQGIPIMIAWNYGGNDVAVEGSWDNWTSRKTLQRSGKDHSILLVLPSGVYHYKFIVDGEWRYIPDLPFIADEMGRVCNLLDVNDYVPENLESVAEFEAPPSPNSSYSQAFPAEEDFAKEPVLVPPQLHLTVLGMPNSEEPSCSKPQHVVLNHLFIEKGWASQSVVALGLTNRFQSKYVTVVLYKPLKR* 287
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00917 286 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 286 IPR043554 -
Vivi6g00917 286 SMART AMPKBI-2 197 284 IPR006828 GO:0005515(InterPro)
Vivi6g00917 286 SUPERFAMILY E set domains 100 182 IPR014756 -
Vivi6g00917 286 MobiDBLite consensus disorder prediction 1 99 - -
Vivi6g00917 286 MobiDBLite consensus disorder prediction 37 57 - -
Vivi6g00917 286 CDD E-set-AMPKbeta-like-N 103 180 - -
Vivi6g00917 286 Pfam Glycogen recognition site of AMP-activated protein kinase 102 182 IPR032640 -
Vivi6g00917 286 Gene3D - 190 284 - -
Vivi6g00917 286 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 214 283 IPR006828 GO:0005515(InterPro)
Vivi6g00917 286 SUPERFAMILY AMPKBI-like 184 284 IPR037256 -
Vivi6g00917 286 Gene3D Immunoglobulins 94 184 IPR013783 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00917 K07199 5'-AMP-activated protein kinase, regulatory beta subunit
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr6:14133581 Vivi6g01064 Vivi-Chr6:17681979 dispersed