AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00931 ATGAGGAAGAAGCTCGACACACGATTCCCTGCCTCCCGTATTAAGAAGATAATGCAAGCTGACGAAGATGTTGGGAAGATTGCTTTGGCTGTGCCTCTCCTAGTTTCTAAAGCTTTGGAACTATTTCTGCAAGATCTTTGTGATCGAACATACCAGATAACACTTGAAAGAGGAGCGAAGACAATGAGTTCTTTGCATTTGAAGCAATGTGTACAGAGATTTAATGTATTTGATTTCCTAAGAGAAATTGTCAGCAAGGTTCCTGATCTAGGTTGTTCTGATGCTGGTGGGGAGGATCGATCTGCCTCCAAAAGAAGGAAAGTTGTTGATGATGAAGGAAATGACAGTGATGAAGAGTCAAAGAGAAGCAGGATGCATGAAACAGGCCACACCGTTGGCAGTGGCAGTGGCAGTGGCAGTGGCAGAGGACGAGGAAGGGGAAGAGGAAGAGGTCGTGGGAGGGGCAGTCGAACAATAGAAAGGGATACCATTGCAGAAAGTGAGAAGCCTGAAGATGACACTGACATGCACACTAACAATGACAATCAGAGCCAAAATCCTGAGACGCGGGATAATGGGGCTGAGCCCGAAGAATCAAAGGAGAATATATCAGTTGTCAAGAATGAATCAAAGGAGAATATATCAGTTGGAAAGAATGCTGATTCATGTGTTCGAAACTTTGACCTGAATGTGGATTTGGATGAGAATGGAGACTCAACATCGATATTGCCAGCTGCCCCTGCCCCTGCCCCTGTTACCCCATCACCAAAACTTACTGAAATGAAGCATGAGGAATACCCTGGGTGGTCCCTCTCTGACATGGAAAAGATGGAGATAGATCCCATTCAACTGGCCAACTTAAATCGAAGAATAGATGAAGATGAGGAAGATTATGATGAAGAATAA 906 44.48 MRKKLDTRFPASRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYQITLERGAKTMSSLHLKQCVQRFNVFDFLREIVSKVPDLGCSDAGGEDRSASKRRKVVDDEGNDSDEESKRSRMHETGHTVGSGSGSGSGRGRGRGRGRGRGRGSRTIERDTIAESEKPEDDTDMHTNNDNQSQNPETRDNGAEPEESKENISVVKNESKENISVGKNADSCVRNFDLNVDLDENGDSTSILPAAPAPAPVTPSPKLTEMKHEEYPGWSLSDMEKMEIDPIQLANLNRRIDEDEEDYDEE* 302
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00931 301 MobiDBLite consensus disorder prediction 235 260 - -
Vivi6g00931 301 FunFam dr1-associated corepressor homolog 1 86 - -
Vivi6g00931 301 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
Vivi6g00931 301 MobiDBLite consensus disorder prediction 90 223 - -
Vivi6g00931 301 MobiDBLite consensus disorder prediction 98 128 - -
Vivi6g00931 301 MobiDBLite consensus disorder prediction 191 207 - -
Vivi6g00931 301 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982(InterPro)
Vivi6g00931 301 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 179 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Vivi6g00931 301 MobiDBLite consensus disorder prediction 153 178 - -
Vivi6g00931 301 Pfam Histone-like transcription factor (CBF-NF-Y) and archaeal histone 8 71 IPR003958 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00931 K21752 Dr1-associated corepressor
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr13:18534479 Vivi6g00931 Vivi-Chr6:14421551 dispersed
Vivi Vivi-Chr2:3263715 Vivi6g00931 Vivi-Chr6:14421551 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi17g00085 . 47 234 CCAAT-HAP5 Transcription Factor family AT3G48590 67.539 1.04e-64 198.0
Vivi5g00441 . 127 199 CCAAT-HAP5 Transcription Factor family AT1G08970 69.737 2.86e-27 98.2
Vivi2g00346 . 69 154 CCAAT-HAP5 Transcription Factor family AT1G54830 60.92 1.99e-33 114.0
Vivi6g00284 . 91 197 CCAAT-HAP5 Transcription Factor family AT1G07980 46.729 7.58e-28 107.0
Vivi14g00838 . 96 184 CCAAT-HAP5 Transcription Factor family AT5G63470 52.809 4.36e-22 86.3
Vivi13g00930 . 1 140 CCAAT-HAP5 Transcription Factor family AT3G12480 74.286 1.24e-70 218.0
Vivi19g01141 . 57 194 CCAAT-HAP5 Transcription Factor family AT1G56170 56.738 4.88e-42 135.0
Vivi6g00931 . 1 282 CCAAT-HAP5 Transcription Factor family AT3G12480 47.573 1.72e-73 226.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Vivi CBFD_NFYB_HMF 1.6e-17 CL0012 TF NF-YC