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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi8g00060 ATGACATCAAAAACATTGAGGAGAAGGCTCCATCATGGAGATGTTGATGGAAAAAGGCATGAGCATTTAGAGACATCGGGTTTGGATGGTTTAAATGAACCTTTACTAGGCAATTATGAATATGATGATAAAGATTCAGAGGGGCCTGTGCTTAAAGACCTCTGGGATGATGAACGAAGGAAGGAGCACCAACACTGGACGATATTATTTTCCCATTTGATTGCAGAATGGGCACAATGGTTAGCTAATATTGTTATAGGTTCTGGAACGCTCCTTAAACGTCTTTTGCCCTTTGATTCTACAACACAAAATGGTCAAAGCAAGAAGATATTGCCACCTTCACTAAGTCCTTTACAGGGGGAAAGACTCAGAAATATGCAGCAAAGACTGGAAGTTCCTTTTGATGGTTCTTGCGTGGAGCATCAGGATGCACTTAGAGAACTCTGGAGCTTAGCTTATCCTGGTAGGGAGCTCCCCTCTCTTAAGTCAGAGCTCTGGAAGGAGATGGGTTGGCAAGGTACTGATCCTTCGACAGATTTTAGGGGTGGCGGATTTATATCATTGGAGAATCTTATCTTTTTTGCCAAGAAGTATCCGGATACATTCCAGAGGTTGTTACACAAACTTGACGGAAACAGGGCCGATTGGGAGTATCCCTTTGCTGTAGCTGGCATCAATATTTCTTTTATGTTGATACAAATGTTAGATCTTCAATCAGGAAAGCCAACTTCTCAGGCAGCAGTCCGGTTTTTACAGCTACTTGGCGAAGATGAAATGGCATTTGACAACCTCTTCTGTGTTGCCTTTCAAATGATGGATGCTCAGTGGCTTGCAAAGCGCGCTTCATATATGGAATTTAATGATGTTCTAAAGTCTACCAGAACACAACTAGAGCGGGAGCTTGAGCTTGAAGATGTCTTCAGTGTGAGAGATTTACCAGCATACAACATGTTGAGAAGATAG 963 42.37 MTSKTLRRRLHHGDVDGKRHEHLETSGLDGLNEPLLGNYEYDDKDSEGPVLKDLWDDERRKEHQHWTILFSHLIAEWAQWLANIVIGSGTLLKRLLPFDSTTQNGQSKKILPPSLSPLQGERLRNMQQRLEVPFDGSCVEHQDALRELWSLAYPGRELPSLKSELWKEMGWQGTDPSTDFRGGGFISLENLIFFAKKYPDTFQRLLHKLDGNRADWEYPFAVAGINISFMLIQMLDLQSGKPTSQAAVRFLQLLGEDEMAFDNLFCVAFQMMDAQWLAKRASYMEFNDVLKSTRTQLERELELEDVFSVRDLPAYNMLRR* 321
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi8g00060 320 MobiDBLite consensus disorder prediction 1 31 - -
Vivi8g00060 320 MobiDBLite consensus disorder prediction 7 27 - -
Vivi8g00060 320 PANTHER ENGULFMENT AND CELL MOTILITY 91 317 IPR050868 -
Vivi8g00060 320 ProSiteProfiles ELMO domain profile. 140 301 IPR006816 -
Vivi8g00060 320 Pfam ELMO-CED-12 family 125 290 IPR006816 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi8g00060 K23538 ELMO domain-containing protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr1:20870539 Vivi8g00060 Vivi-Chr8:1240889 dispersed
Vivi Vivi-Chr8:1240889 Vivi9g00748 Vivi-Chr9:12006027 dispersed