AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi8g00433 ATGTCATTTTTGGTAATAGGAGCATTTAGTTATGCTGTATGCATTACTGTTCTCTCGTCATTCACCATATGGGATGTTGCTAAAGGGCTAGGGACACCCATTCGACGGGGATTAGGAGGCATATCAATACTGAAGTGGTCACCTACTGGAGATTATTTTTTATCTGCCAAATTTGATGGAACATTTTATCTTTGGGAGACAAACACATGGACATCAGAACCATGGTCTTCAACTAGTGGTTTTGTCACGGGAGCAACATGGGATCCTGATGGGCATATGGTACTGATTGCTTTCTCAAAATCCTCAACATTGGGTTCTGTTCACTTTGCATCAAAGCCTCCATCATTGGATGCACACCTGTTACCAGTTGATTTGCCAGAGATAATGTCTTTGACAGGCAGTCAAGGCATTGAGAAGATAGCTTGGGATGCTACAGGAGAGCGACTGGCTTTGTCATATAAAGGTGGGGATGAATTATACAAGGGTCTCATTGCCATATATGATGTTAGAAGGAATCCTCTGATTTCTGCATCATTAATTGGGTTTATTAGGGGGCCTGGCGAAAATCCGAAACCTTTAGCATTTTCATTTCATGACAAGTTCAAGCAAGGTCCATTGCTTTCTGTGTGTTGGAGCAGTGGCTTTTGCTGCACCTACCCTCTCATTTTCCGCTCTCATGCTCTTTCATAA 690 42.46 MSFLVIGAFSYAVCITVLSSFTIWDVAKGLGTPIRRGLGGISILKWSPTGDYFLSAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPDGHMVLIAFSKSSTLGSVHFASKPPSLDAHLLPVDLPEIMSLTGSQGIEKIAWDATGERLALSYKGGDELYKGLIAIYDVRRNPLISASLIGFIRGPGENPKPLAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHALS* 230
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi8g00433 229 ProSiteProfiles Trp-Asp (WD) repeats profile. 41 69 IPR001680 GO:0005515(InterPro)
Vivi8g00433 229 PANTHER ALADIN-ADRACALIN-AAAS 11 227 IPR045139 GO:0005643(PANTHER)|GO:0006913(PANTHER)
Vivi8g00433 229 FunFam Aladin isoform A 6 218 - -
Vivi8g00433 229 Pfam WD domain, G-beta repeat 40 65 IPR001680 GO:0005515(InterPro)
Vivi8g00433 229 SUPERFAMILY DPP6 N-terminal domain-like 20 189 - -
Vivi8g00433 229 Gene3D - 9 218 IPR015943 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi8g00433 K14320 aladin