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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi8g00439 ATGATTGGGAGCACAGATCCTAATCTGGGTATTCCTTGTTCCTCCAAAGCCGCAGACCGGAGCAAGCCCAAGAGGCTGTATCAAGTCTGGAAGGGGGCCAACAGATTTTTCTGTGGTGGAAGATTGATCTTTGGTCCTGATGTGGCATCCCTCTTTTTGTCCACACTTCTAATTGCGGGCCCTGGAATAGGTTTTTGTTTAAAAATCCATTACAAGATCAAAGAAGATGATGATGATTATGGTCGAACGTTCGCACATCACGTTGTATGGTATTCTATAATGGCTGTGGGAGCATTTCTCACTATTTTGGATTTAATGTTTCTCTTTGTGACATCCAGTAGAGATCCTGGAATAGTCCCTAGAAACTCAAAGCCTCCTGAATTAGATGAAGCATTTGATGTAACAACCCCATCTATGGAGTGGGTCAATGGTAGAACCCCTCATTTGAAACTACCTCGAACAAAGGATGTTCTGGTGAATGGCCACATAGTGAAAGTGAAGTACTGTGACACTTGTTTGCTTTATCGTCCTCCTCGTGTTTCTCACTGCTCAATCTGCAACAACTGTGTTCAGAGATTTGATCATCACTGTCCATGGGTTGGTCAATGCATTGGAATACGCAACTATCGGTTCTTCTTCATGTTTATATCAACATCAACCATCCTGTGCTTATATGTCTTTACATTTTCCTGGATCATCATTATTCAAGGAAAGGGCGATGATATTTTGAAGGCTATGGGAAATGACTTCTTGTCAGATTTTCTCATTGTGTACTGCTTCGTGGTCATCTGGTTTGTTGGTGGCCTTACAGTTTTCCATTCCTATCTGATTTGCACGAACCAGACAACGTATGAAAACTTCCGGTATCGATATGATAAGAAGGAGAACCCATATAGTAAAGGGATTATAAAGAATCTCAAAGAAACTTTTCTCTCTAAGATTCCACCTTCAATGAATGATTTTCGATCATTAGTGCAGGAATCCGAACCTATGGTGGTTGAATCTATGACTTCCAATCCTGAGGGAGGCATCATGAATTTGAAAGAGAAAATCGACATAGAAATGGGAGCTAAGCTTGCAGAAGAAAATGGGTTTCGACTTCCTGAAATTTTGAGAAATTTGGATTATGATGGTTATCTCCATACCAAGCACAACAACTCAACTATAGAGGTTTGGCTGCCTGAATATCTCTTCTGTGGGCATTATGGATGTGTGTTGTTTCTGCAATGGCAGCATTCGGTCATCTTGAGAAGAGGCTTTAAGTCAATTTCCAAATACAGAGGCTGA 1287 41.03 MIGSTDPNLGIPCSSKAADRSKPKRLYQVWKGANRFFCGGRLIFGPDVASLFLSTLLIAGPGIGFCLKIHYKIKEDDDDYGRTFAHHVVWYSIMAVGAFLTILDLMFLFVTSSRDPGIVPRNSKPPELDEAFDVTTPSMEWVNGRTPHLKLPRTKDVLVNGHIVKVKYCDTCLLYRPPRVSHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFFMFISTSTILCLYVFTFSWIIIIQGKGDDILKAMGNDFLSDFLIVYCFVVIWFVGGLTVFHSYLICTNQTTYENFRYRYDKKENPYSKGIIKNLKETFLSKIPPSMNDFRSLVQESEPMVVESMTSNPEGGIMNLKEKIDIEMGAKLAEENGFRLPEILRNLDYDGYLHTKHNNSTIEVWLPEYLFCGHYGCVLFLQWQHSVILRRGFKSISKYRG* 429
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi8g00439 428 Pfam DHHC palmitoyltransferase 167 288 IPR001594 GO:0016409(InterPro)
Vivi8g00439 428 ProSiteProfiles DHHC domain profile. 167 217 - -
Vivi8g00439 428 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 68 327 - GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0006612(PANTHER)|GO:0018230(PANTHER)|GO:0019706(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi8g00439 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr8:11307999 Vivi8g00439 Vivi-Chr8:11313101 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vivi1g00587 . 7 318 Lipid Metabolism gene family AT1G67730 58.654 1.39e-139 394.0
Vivi1g00586 . 19 316 Lipid Metabolism gene family AT1G67730 49.333 3.89e-103 316.0
Vivi1g00585 . 19 312 Lipid Metabolism gene family AT1G67730 50.0 9.02e-109 318.0
Vivi1g00582 . 14 313 Lipid Metabolism gene family AT1G67730 51.987 1.08e-119 345.0
Vivi19g00874 . 243 366 Lipid Metabolism gene family AT3G61300 31.2 5.50e-09 57.8
Vivi1g01374 . 44 262 Lipid Metabolism gene family AT4G22750 27.049 4.57e-14 70.9
Vivi7g00082 . 2 161 Lipid Metabolism gene family AT3G22600 58.125 2.72e-53 165.0
Vivi7g00078 . 31 173 Lipid Metabolism gene family AT2G48140 58.974 7.51e-46 147.0
Vivi17g00818 . 296 429 Lipid Metabolism gene family AT1G22610 29.577 1.32e-08 57.4
Vivi17g00743 . 927 1075 Lipid Metabolism gene family AT5G09350 24.503 5.91e-07 53.5
Vivi17g00506 . 3 1081 Lipid Metabolism gene family AT1G74720 64.114 0.0 1354.0
Vivi17g00368 . 1 153 Lipid Metabolism gene family AT3G18570 50.0 5.61e-40 136.0
Vivi17g00354 . 1 684 Lipid Metabolism gene family AT1G73920 71.574 0.0 969.0
Vivi17g00316 . 41 356 Lipid Metabolism gene family AT3G57880 24.214 2.52e-10 62.4
Vivi17g00274 . 61 284 Lipid Metabolism gene family AT1G15080 69.643 3.13e-115 330.0
Vivi17g00060 . 52 281 Lipid Metabolism gene family AT4G22750 28.049 1.13e-20 90.1
Vivi18g00598 . 346 432 Lipid Metabolism gene family AT1G73920 54.023 6.28e-20 88.6
Vivi18g01140 . 244 322 Lipid Metabolism gene family AT3G61300 34.884 7.44e-08 47.8
Vivi18g01144 . 246 498 Lipid Metabolism gene family AT3G61300 30.466 3.70e-15 77.0
Vivi1g01037 . 107 177 Lipid Metabolism gene family AT4G22750 47.887 2.72e-14 70.5
Vivi5g01274 . 13 375 Lipid Metabolism gene family AT2G33630 28.989 8.35e-31 124.0
Vivi11g00884 . 10 100 Lipid Metabolism gene family AT4G29470 44.681 1.75e-19 78.6
Vivi8g00256 . 1 433 Lipid Metabolism gene family AT5G05580 76.147 0.0 693.0
Vivi1g00364 . 1 289 Lipid Metabolism gene family AT1G15080 80.0 1.15e-168 468.0
Vivi1g00363 . 51 364 Lipid Metabolism gene family AT3G02600 66.25 1.34e-158 447.0
Vivi1g00361 . 51 363 Lipid Metabolism gene family AT3G02600 68.339 3.35e-161 454.0
Vivi1g00343 . 1 267 Lipid Metabolism gene family AT3G02580 59.925 1.23e-124 355.0
Vivi1g00342 . 5 269 Lipid Metabolism gene family AT3G02580 61.509 6.49e-127 360.0
Vivi1g00109 . 146 303 Lipid Metabolism gene family AT2G34980 81.013 1.31e-78 234.0
Vivi1g00945 . 104 237 Lipid Metabolism gene family AT4G22750 28.276 1.71e-09 57.4
Vivi11g00545 . 41 298 Lipid Metabolism gene family AT1G51570 27.66 2.68e-14 74.3
Vivi18g00065 . 117 158 Lipid Metabolism gene family AT4G22750 45.238 3.06e-07 50.4
Vivi18g00048 . 1 479 Lipid Metabolism gene family AT2G33630 72.083 0.0 733.0
Vivi11g00156 . 52 518 Lipid Metabolism gene family AT2G19450 70.316 0.0 699.0
Vivi11g00411 . 1 306 Lipid Metabolism gene family AT5G19980 72.964 3.41e-155 438.0
Vivi3g01058 . 91 158 Lipid Metabolism gene family AT4G22750 37.143 1.97e-07 51.6
Vivi9g00923 . 3 627 Lipid Metabolism gene family AT5G57800 63.52 0.0 838.0
Vivi9g00925 . 3 627 Lipid Metabolism gene family AT5G57800 63.36 0.0 839.0
Vivi9g00936 . 246 322 Lipid Metabolism gene family AT3G61300 33.75 1.37e-07 45.8
Vivi13g00544 . 28 270 Lipid Metabolism gene family AT4G22750 33.858 7.72e-35 125.0
Vivi13g00346 . 1 259 Lipid Metabolism gene family AT1G07420 85.714 2.79e-173 477.0
Vivi5g00527 . 22 170 Lipid Metabolism gene family AT3G22600 56.209 1.02e-47 150.0
Vivi5g00528 . 5 106 Lipid Metabolism gene family AT3G22600 60.784 1.45e-37 123.0
Vivi15g00246 . 90 428 Lipid Metabolism gene family AT2G44520 69.577 0.0 509.0
Vivi15g00222 . 1 252 Lipid Metabolism gene family AT1G02190 65.476 2.19e-115 342.0
Vivi15g00221 . 1 613 Lipid Metabolism gene family AT1G02190 59.416 0.0 744.0
Vivi15g00220 . 1 620 Lipid Metabolism gene family AT1G02190 59.23 0.0 762.0
Vivi15g00219 . 1 610 Lipid Metabolism gene family AT2G37700 60.995 0.0 769.0
Vivi15g00217 . 1 246 Lipid Metabolism gene family AT1G02190 63.821 1.05e-106 319.0
Vivi15g00215 . 1 244 Lipid Metabolism gene family AT1G02190 59.184 2.22e-93 287.0
Vivi16g00406 . 3 329 Lipid Metabolism gene family AT1G76340 74.474 2.74e-173 484.0
Vivi4g01103 . 553 718 Lipid Metabolism gene family AT5G06850 74.096 4.19e-83 258.0
Vivi4g00887 . 56 250 Lipid Metabolism gene family AT1G67730 33.663 2.83e-22 93.2
Vivi2g00203 . 55 249 Lipid Metabolism gene family AT1G24470 29.412 2.00e-10 59.3
Vivi2g00332 . 267 534 Lipid Metabolism gene family AT4G11610 61.194 1.08e-100 337.0
Vivi10g00396 . 244 322 Lipid Metabolism gene family AT3G61300 34.884 8.20e-08 47.4
Vivi10g00587 . 1 237 Lipid Metabolism gene family AT2G34770 70.042 9.81e-130 364.0
Vivi10g00588 . 1 237 Lipid Metabolism gene family AT2G34770 75.527 3.33e-140 393.0
Vivi14g00349 . 28 240 Lipid Metabolism gene family AT4G22750 29.362 3.08e-13 68.2
Vivi7g01191 . 50 260 Lipid Metabolism gene family AT4G22750 28.947 6.16e-17 79.3
Vivi8g00161 . 1 697 Lipid Metabolism gene family AT5G17980 56.564 0.0 775.0
Vivi11g00754 . 3 629 Lipid Metabolism gene family AT5G57800 69.856 0.0 940.0
Vivi3g00166 . 1 227 Lipid Metabolism gene family AT1G68000 74.449 5.13e-125 351.0
Vivi3g00153 . 247 499 Lipid Metabolism gene family AT3G61300 28.881 1.12e-12 68.9
Vivi6g00638 . 111 430 Lipid Metabolism gene family AT5G05580 77.812 0.0 543.0
Vivi6g00637 . 75 430 Lipid Metabolism gene family AT5G05580 73.876 0.0 587.0
Vivi6g00620 . 35 262 Lipid Metabolism gene family AT5G60510 32.618 5.38e-33 119.0
Vivi6g00523 . 1 260 Lipid Metabolism gene family AT1G07420 85.0 7.63e-170 468.0
Vivi6g00429 . 64 144 Lipid Metabolism gene family AT4G22750 30.864 5.63e-06 45.4
Vivi6g00147 . 1 399 Lipid Metabolism gene family AT3G57880 66.5 0.0 537.0
Vivi6g00122 . 1 348 Lipid Metabolism gene family AT3G12120 70.977 1.59e-179 503.0
Vivi8g00439 . 56 262 Lipid Metabolism gene family AT4G22750 29.075 9.68e-19 84.7
Vivi8g00438 . 78 283 Lipid Metabolism gene family AT4G22750 28.889 9.24e-17 78.2
Vivi10g00700 . 55 153 Lipid Metabolism gene family AT4G22750 55.556 6.31e-34 119.0
Vivi4g01294 . 519 1121 Lipid Metabolism gene family AT5G64070 80.882 0.0 999.0
Vivi15g00175 . 528 553 Lipid Metabolism gene family AT2G37700 73.077 7.10e-10 50.4
Vivi15g00183 . 1 622 Lipid Metabolism gene family AT1G02190 57.668 0.0 732.0
Vivi15g00184 . 1 622 Lipid Metabolism gene family AT1G02190 57.348 0.0 726.0
Vivi15g00185 . 115 182 Lipid Metabolism gene family AT2G37700 70.588 4.88e-20 82.0
Vivi15g00903 . 1 663 Lipid Metabolism gene family AT4G00700 51.263 0.0 590.0
Vivi15g00789 . 6 429 Lipid Metabolism gene family AT2G46210 64.387 0.0 577.0
Vivi15g00631 . 1 295 Lipid Metabolism gene family AT4G22750 55.195 1.12e-104 306.0
Vivi15g00516 . 233 337 Lipid Metabolism gene family AT3G61300 34.906 7.57e-12 65.5
Vivi15g00457 . 1 297 Lipid Metabolism gene family AT4G22750 66.777 9.94e-134 379.0
Vivi15g00418 . 40 430 Lipid Metabolism gene family AT2G45150 68.812 0.0 532.0
Vivi7g00497 . 104 237 Lipid Metabolism gene family AT4G22750 29.861 2.13e-11 63.2
Vivi7g00544 . 12 270 Lipid Metabolism gene family AT5G60510 49.615 1.18e-88 263.0
Vivi7g00667 . 8 1004 Lipid Metabolism gene family AT1G04150 57.654 0.0 1062.0
Vivi12g00870 . 33 174 Lipid Metabolism gene family AT5G64080 50.323 1.76e-47 151.0
Vivi12g00877 . 246 322 Lipid Metabolism gene family AT3G61300 35.0 1.38e-08 49.7
Vivi8g00109 . 1 511 Lipid Metabolism gene family AT3G03680 64.865 0.0 599.0
Vivi12g00375 . 29 260 Lipid Metabolism gene family AT4G22750 27.615 3.41e-17 79.3
Vivi14g00845 . 5 358 Lipid Metabolism gene family AT3G02600 65.922 3.41e-176 492.0
Vivi14g00863 . 11 274 Lipid Metabolism gene family AT3G02580 77.652 3.33e-157 437.0
Vivi14g00879 . 43 291 Lipid Metabolism gene family AT1G51570 26.984 1.71e-09 59.3
Vivi13g01191 . 199 595 Lipid Metabolism gene family AT3G61300 39.506 1.75e-79 269.0
Vivi13g01189 . 126 417 Lipid Metabolism gene family AT5G06850 71.575 7.74e-154 455.0
Vivi13g01188 . 6 143 Lipid Metabolism gene family AT5G48060 61.594 3.29e-49 173.0
Vivi14g01407 . 11 982 Lipid Metabolism gene family AT3G01380 74.286 0.0 1486.0
Vivi13g00201 . 103 296 Lipid Metabolism gene family AT2G39290 83.249 3.86e-115 329.0
Vivi13g00059 . 1 434 Lipid Metabolism gene family AT5G05580 74.501 0.0 689.0
Vivi14g01131 . 50 260 Lipid Metabolism gene family AT4G22750 28.947 8.09e-19 85.1
Vivi8g01264 . 1 167 Lipid Metabolism gene family AT3G12120 76.048 1.36e-92 277.0
Vivi8g01241 . 209 458 Lipid Metabolism gene family AT3G57880 71.937 1.10e-122 370.0
Vivi8g01238 . 53 418 Lipid Metabolism gene family AT5G06850 75.683 0.0 602.0
Vivi8g00752 . 66 270 Lipid Metabolism gene family AT4G22750 35.023 2.00e-31 116.0
Vivi8g00736 . 270 347 Lipid Metabolism gene family AT4G00700 33.333 4.38e-07 46.2
Vivi9g00774 . 81 396 Lipid Metabolism gene family AT3G01380 21.557 5.31e-08 55.1
Vivi18g01421 . 170 1020 Lipid Metabolism gene family AT1G22610 71.345 0.0 1265.0
Vivi18g01350 . 54 301 Lipid Metabolism gene family AT4G22750 25.735 2.77e-16 77.4
Vivi4g00097 . 7 444 Lipid Metabolism gene family AT2G46210 60.959 0.0 558.0
Vivi4g00182 . 31 380 Lipid Metabolism gene family AT2G33630 32.418 6.21e-47 169.0
Vivi4g00506 . 41 298 Lipid Metabolism gene family AT1G51570 27.562 1.26e-12 68.9
Vivi2g00941 . 505 583 Lipid Metabolism gene family AT5G06850 84.81 1.90e-40 139.0
Vivi6g00819 . 8 73 Lipid Metabolism gene family AT4G11610 36.986 3.06e-07 45.8
Vivi19g00574 . 2 419 Lipid Metabolism gene family AT1G62430 78.708 0.0 699.0
Vivi10g00643 . 3 370 Lipid Metabolism gene family AT1G76340 78.016 0.0 574.0