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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi8g00442 ATGAGCAGCATAGGAACTGGATACGATCTCTCTGTCACCACATTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATACGCCGCCAAAGCTGTCGATAACAGCGGGACTGTCATTGGGATTAAATGCAAAGATGGGATTGTCTTGGGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAGGCTGAAGCCACCAATTATCAAAGTGTGTATGGTGAAGCAATTCCTGTGAAGGAACTTGCCGAACGAGTGGCTAGTTATGTGCATTTATGTACCCTATACTGGTGGCTCAGACCTTTTGGATGTGGAGTAATTCTTGGAGGTTATGACAGAGATGGACCACAATTGTACATGGTTGAACCTTCTGGTGTTTCCTATAGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACAGAGATTGAGAAGTTGAAGCTTTCTGAATTGTCTTGTCGACAAGGGGTTATTGAAGTAGCCAAGATCATTTATGGGGTACACGATGAGGCCAAGGACAAGGCATTTGAGTTGGAAATGAGCTGGGTTTGTGAGGAGTCAAACCGCCAGCATCAGAAGGTTCCTGATGACCTTTTAGAGGAAGCCAAGGCAGCAGCTAAAGCAGCTCTGGAAGAAATGGATGCAGATTAG 750 46.67 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVLGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKAEATNYQSVYGEAIPVKELAERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGVSYRYFGAAIGKGRQAAKTEIEKLKLSELSCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCEESNRQHQKVPDDLLEEAKAAAKAALEEMDAD* 250
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi8g00442 249 Pfam Proteasome subunit 31 216 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Vivi8g00442 249 SMART Proteasome-A-N-2 8 30 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Vivi8g00442 249 Pfam Proteasome subunit A N-terminal signature 8 30 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Vivi8g00442 249 ProSitePatterns Proteasome alpha-type subunits signature. 8 30 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Vivi8g00442 249 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 242 IPR029055 -
Vivi8g00442 249 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 249 IPR029055 -
Vivi8g00442 249 ProSiteProfiles Proteasome alpha-type subunit profile. 23 236 IPR023332 -
Vivi8g00442 249 PANTHER PROTEASOME SUBUNIT ALPHA-BETA 6 232 IPR050115 GO:0005634(PANTHER)|GO:0010498(PANTHER)|GO:0019773(PANTHER)
Vivi8g00442 249 FunFam Proteasome subunit alpha type 1 249 - -
Vivi8g00442 249 CDD proteasome-alpha-type-3 5 216 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi8g00442 K02727 20S proteasome subunit alpha 7 [EC:3.4.25.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr8:11340473 Vivi9g00020 Vivi-Chr9:261021 dispersed
Vivi Vivi-Chr8:11340473 Vivi3g00150 Vivi-Chr3:1570599 transposed
Vivi Vivi-Chr8:11340473 Vivi4g01139 Vivi-Chr4:20238997 transposed