AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi8g00444 ATGCCTTTGAGGGATGCAGACATGGAGGATTATGGATTTGAGTACTCAGAAGAGGAGCCTGAGGAGCAGGATGTTGATATTGAGAATCAATATTACAATTCTAAAGGTTTGGTTGAGACTGATCCAGAAGGTGCACTTGCTGGCTTTGCTGAAGTAGTTCGCATGGAACCAGAGAAGGCAGAGTGGGGATTTAAAGCTCTAAAACAAACAGTCAAGCTTTATTATCGGTTAGGGAAGTATAAAGAGATGATGGAAGCCTATAGGGTGATGTTGACCTATATTAAATCTGCAGTGACACGAAACTACAGTGAAAAATGCATCAACAACATCATGGATTTTGTTTCTGGATCAGCTAGCCAGAATTTTGGGCTTCTGCAAGAGTTTTACCAGACCACTCTGAAGGCCCTTGAAGAGGCAAAAAATGAGAGATTGTGGTTTAAGACAAATCTTAAGCTTTGCAAGATTTGGTTCGACATGGGTGAATATGGGCGAATGAGTAAGATTTTGAAAGAACTTCACAAATCTTGTCGAAGAGAAGATGGTACAGATGATCAAAAGAAAGGAACCCAACTTTTGGAAGTATATGCAATTGAGATTCAAATGTATACTGAGACCAAGAATAACAAAAAACTCAAGCAACTATACCAGAAAGCACTTACAATCAAATCAGCCATACCCCATCCAAGAATAATGGGGATAATTCATGAATGTGGTGGGAAAATGCATATGGCAGAGCGCCAATGGGCAGATGCAGCAACTGACTTTTTTGAAGCTTTTAAGAATTATGATGAAGCTGGGAATCAGCGACGTATCCAATGCTTAAAATACTTGGTTCTGGCTAACATGCTCATGGAGTCAGAAGTTAATCCTTTTGATGGACAGGAGGCAAAGCCATATAAAAATGATCCTGAAATTTTGGCCATGACAAATCTGATAGCAGCATATCAACGCAATGAGATATTGGAGTTTGAAAAAATTCTGAAGAGTAATAGAAGAACAATTATGGATGATCTCTTCATCAGAAATTACATCGAGGATCTGTTAAAAAATATTAGAACACAAGTGTTGCTCAAGCTCATCAAACCATACACGAGAATCCGTATCCCTTTCATATCAAAGGAGCTGAATGTGCCAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCTTAAATCCCTTTATCAAACTATTAGCAATCGAGTGGGTTGA 1323 39.46 MPLRDADMEDYGFEYSEEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAEWGFKALKQTVKLYYRLGKYKEMMEAYRVMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFGLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCRREDGTDDQKKGTQLLEVYAIEIQMYTETKNNKKLKQLYQKALTIKSAIPHPRIMGIIHECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDLFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISKELNVPEEDVEQLLVSLILDNRIQGHIDQVNRLLERGDRSKGMKKYAAVEKWNTQLKSLYQTISNRVG* 441
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi8g00444 440 Gene3D - 65 440 - -
Vivi8g00444 440 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11-COP9 SIGNALOSOME COMPLEX SUBUNIT 2 5 438 IPR050871 GO:0000338(PANTHER)|GO:0008180(PANTHER)
Vivi8g00444 440 Pfam PCI domain 327 407 IPR000717 -
Vivi8g00444 440 SUPERFAMILY Winged helix DNA-binding domain 336 412 IPR036390 -
Vivi8g00444 440 SMART PCI-PINT associated module 166 340 - -
Vivi8g00444 440 ProSiteProfiles PCI domain profile. 244 413 IPR000717 -
Vivi8g00444 440 FunFam COP9 signalosome complex subunit 2 65 440 - -
Vivi8g00444 440 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 342 424 IPR000717 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi8g00444 K12176 COP9 signalosome complex subunit 2