Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi8g00444 | ATGCCTTTGAGGGATGCAGACATGGAGGATTATGGATTTGAGTACTCAGAAGAGGAGCCTGAGGAGCAGGATGTTGATATTGAGAATCAATATTACAATTCTAAAGGTTTGGTTGAGACTGATCCAGAAGGTGCACTTGCTGGCTTTGCTGAAGTAGTTCGCATGGAACCAGAGAAGGCAGAGTGGGGATTTAAAGCTCTAAAACAAACAGTCAAGCTTTATTATCGGTTAGGGAAGTATAAAGAGATGATGGAAGCCTATAGGGTGATGTTGACCTATATTAAATCTGCAGTGACACGAAACTACAGTGAAAAATGCATCAACAACATCATGGATTTTGTTTCTGGATCAGCTAGCCAGAATTTTGGGCTTCTGCAAGAGTTTTACCAGACCACTCTGAAGGCCCTTGAAGAGGCAAAAAATGAGAGATTGTGGTTTAAGACAAATCTTAAGCTTTGCAAGATTTGGTTCGACATGGGTGAATATGGGCGAATGAGTAAGATTTTGAAAGAACTTCACAAATCTTGTCGAAGAGAAGATGGTACAGATGATCAAAAGAAAGGAACCCAACTTTTGGAAGTATATGCAATTGAGATTCAAATGTATACTGAGACCAAGAATAACAAAAAACTCAAGCAACTATACCAGAAAGCACTTACAATCAAATCAGCCATACCCCATCCAAGAATAATGGGGATAATTCATGAATGTGGTGGGAAAATGCATATGGCAGAGCGCCAATGGGCAGATGCAGCAACTGACTTTTTTGAAGCTTTTAAGAATTATGATGAAGCTGGGAATCAGCGACGTATCCAATGCTTAAAATACTTGGTTCTGGCTAACATGCTCATGGAGTCAGAAGTTAATCCTTTTGATGGACAGGAGGCAAAGCCATATAAAAATGATCCTGAAATTTTGGCCATGACAAATCTGATAGCAGCATATCAACGCAATGAGATATTGGAGTTTGAAAAAATTCTGAAGAGTAATAGAAGAACAATTATGGATGATCTCTTCATCAGAAATTACATCGAGGATCTGTTAAAAAATATTAGAACACAAGTGTTGCTCAAGCTCATCAAACCATACACGAGAATCCGTATCCCTTTCATATCAAAGGAGCTGAATGTGCCAGAGGAAGATGTTGAGCAGCTGTTGGTGTCGCTGATTTTGGATAACCGAATTCAAGGGCATATTGATCAAGTGAACCGATTATTAGAGCGTGGTGACAGATCGAAAGGAATGAAGAAGTATGCAGCAGTGGAGAAATGGAACACACAGCTTAAATCCCTTTATCAAACTATTAGCAATCGAGTGGGTTGA | 1323 | 39.46 | MPLRDADMEDYGFEYSEEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAEWGFKALKQTVKLYYRLGKYKEMMEAYRVMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFGLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCRREDGTDDQKKGTQLLEVYAIEIQMYTETKNNKKLKQLYQKALTIKSAIPHPRIMGIIHECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEILEFEKILKSNRRTIMDDLFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISKELNVPEEDVEQLLVSLILDNRIQGHIDQVNRLLERGDRSKGMKKYAAVEKWNTQLKSLYQTISNRVG* | 441 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi8g00444 | 440 | Gene3D | - | 65 | 440 | - | - | |
| Vivi8g00444 | 440 | PANTHER | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11-COP9 SIGNALOSOME COMPLEX SUBUNIT 2 | 5 | 438 | IPR050871 | GO:0000338(PANTHER)|GO:0008180(PANTHER) | |
| Vivi8g00444 | 440 | Pfam | PCI domain | 327 | 407 | IPR000717 | - | |
| Vivi8g00444 | 440 | SUPERFAMILY | Winged helix DNA-binding domain | 336 | 412 | IPR036390 | - | |
| Vivi8g00444 | 440 | SMART | PCI-PINT associated module | 166 | 340 | - | - | |
| Vivi8g00444 | 440 | ProSiteProfiles | PCI domain profile. | 244 | 413 | IPR000717 | - | |
| Vivi8g00444 | 440 | FunFam | COP9 signalosome complex subunit 2 | 65 | 440 | - | - | |
| Vivi8g00444 | 440 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 342 | 424 | IPR000717 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi8g00444 | K12176 | COP9 signalosome complex subunit 2 |