AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi8g00449 ATGGAAGAGGGAAAGAAGAGAATGGCTGTTTTGGTTGGGTGCAATTACCACAACACCAGAAACGAGCTACATGGCTGTATAAACGATGTACTAACCATGCGCGAGACGCTGGTGACCCGGTTCGGATTCCAGCTGAGCCACGTTGAGCTTCTCACTGATGAACCAGGCTCCTTGGTGATGCCTACTGGTGCAAACATCAAGAAGGCGCTTGATAGGATGGTCGATCAGGCTGAACCCGGGGATGTCCTCTTCTTCCATTACAGTGGTCATGGCACGAAGATCCCTTCCGTGAAACCCCACCACCCCTTTAGCCAAGATGAAGCTATTGTGCCATGTGATTTCAATCTCATCACTGATATAGACTTCAGGCAGCTGGTGGACCGTATACCAAAGGGAGCAAACTTCACAATCCTCTCGGATTCTTGCCACAGTGGGGGCCTCATTGATAAAGAGAAAGAGCAAATTGGGCCTTCTTCAGTCAATTTTACCAGCACCACTTTTCCTTCCCAGAAGCCAAAGATGATACCCTTCGAGGCCATACAGCAGCACCTTTCGTCACTCACGAGCATAAACACTTCAGACATTGGCACCCACTTGTTAGTGCATTTTGGAGGGGATGCCAGCCTCAAGTTTCGTCTACCTCCAACAGCACTGGACTGGTTTGAGTCGCTGCGGTCCGACGCAGGAATTCTATTAAGTGGGTGCCAGGCAAACGAGACTTCCGCAGACATGAATCCAATGATGACCGGAGAGAAGGCCTATGGAGCTTTCAGTAATGCAGTTCAAACGGTTTTCAAGCAGCAGTCGGGTAAATTAAGCAATAAAGAAGTAGTGATGCTGGCCAGGAAGGCTTTGCAGGCCCAACACTTCGAGCAGCACCCTTGTCTGTATTGCAGCGATGAGAATGTTGATGCAACTTTCCTGTGGCAGCCTAAAGGCCCATCTTTACATTATTTGACACTGATCAATCGAGTAAGATAG 981 48.93 MEEGKKRMAVLVGCNYHNTRNELHGCINDVLTMRETLVTRFGFQLSHVELLTDEPGSLVMPTGANIKKALDRMVDQAEPGDVLFFHYSGHGTKIPSVKPHHPFSQDEAIVPCDFNLITDIDFRQLVDRIPKGANFTILSDSCHSGGLIDKEKEQIGPSSVNFTSTTFPSQKPKMIPFEAIQQHLSSLTSINTSDIGTHLLVHFGGDASLKFRLPPTALDWFESLRSDAGILLSGCQANETSADMNPMMTGEKAYGAFSNAVQTVFKQQSGKLSNKEVVMLARKALQAQHFEQHPCLYCSDENVDATFLWQPKGPSLHYLTLINRVR* 327
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi8g00449 326 Pfam Caspase domain 6 299 IPR011600 GO:0004197(InterPro)|GO:0006508(InterPro)
Vivi8g00449 326 SUPERFAMILY Caspase-like 1 115 IPR029030 -
Vivi8g00449 326 Gene3D - 214 310 - -
Vivi8g00449 326 Gene3D - 1 199 - -
Vivi8g00449 326 PANTHER METACASPASE-4 6 308 IPR050452 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi8g00449 K22684 metacaspase-1 [EC:3.4.22.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr19:23626248 Vivi8g00449 Vivi-Chr8:11430916 dispersed