AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi8g00451 ATGGCTAAGAACAGAGAAGCGTTACTGAAGAAGGAGGTTTGGGAGTATGATGAGAGTTGCCCGGGTTGCAAGATAGACCATCTTAAGGAATCCAACCCTGGTATTCCTTTCAAGCTTTTGTTCTATGTCTGGATTGTGGTTCTATGTGCTGCTTTGCCAATATCATCTCTTTTCCCATTCCTTTATTTCATGATAAGGGACTTCCACATTGCAAAAAGGGAGGAAGATATTGGCTTCTATGCTGGTTATGTAGGATCTTCATTTATGTTTGGAAGAGCTTTGACTTCTGTTATATGGGGAATGGTAGCTGATCGATATGGTCGAAAACCTGTGATAACAGCTGGCTTAATTGCACTGATTATTTTCAACACGCTCTTTGGCCTCAGCACAAATGTTTGGATGGCACTTTCTACAAGGTTTCTTCTTGGAAGTTTTTGTGGTATACTTGGCCCAATGAGGGCATATGCTTCGGAAGTTTGTCGTAAAGAATACCAAGCCTTGGGAATGTCAATTATTAGCACAGCATGGGGCATAGGATTGGTCATTGGTCCAGCTCTTGGAGGTTTTCTTGCCCAGCCTGCAGAAAAATTCCCACACATCTTTTCTAAAGAATCCCTTTTTGGGAGGTTTCCTTACTTTCTACCTTGCCTTCTAATATCGACCTTTGCACTGGGTGTATCTGTTCTCTGTTATTGGCTCCCGGAAACACTGCATATCCATAAGGAAAACAAAGAACAGGATGAGTTATATGCATGGGAGGTAGCAGCATATGGATGTGACGTGAAAGAAAAATTGAAAAAATTTGAAGGAAAAGGTCCAAATCAGCAGCAAAGCCTTCTGAAAAATTGGCCCCTAATGTCATCTATCATTGTATATTGTGTTTTCCAACTTCATGATATGGCATATGCAGAGATATTCTCCTTATGGGCTATTAGTCCTAGCGAGTATGGAGGATTGAGCTATTCAACTGCAGATGTTGGTGAAGTTCTTGCAATGTCAGGATTGGGTCTGCTACTATTTCAGCTATTCCTGTACCCTCCATTGGAGAGGATTCTTGGTCCTGTCATGGTATCTCGCATTGGAGCAGTTTTAACCGTACCATTGCTATCAAGTTACCCCTTAATAGCTATGCTATCTGGTGTCGGGCTCTCATTACTGATCAATTGTGCATCTTTATTGAAGAATGTGCTCTGTGTATCAATTACCACAGGATTGTTCCTTCTGCAAAATAGAGCAGTGACCCAACAACAAAGAGGAGCTGCAAATGGCATTTCTATGTCGGCTATGTCTTTTTTCAAAGCAGTTGGTCCAGCTGGAGGCGGTTCACTCTTCTCTTGGGCCTTAAAGCGTCAGAATGATTCCTTTCTTCCAGGTAGCCGGATGGTTTTCTTTATCCTAAACATAATCGAGGTGCTTGGACTTTTTATGACATTCAAACCTTTTCTAACGGTCCCTGGTGAAAATCATCCCTAA 1473 41.89 MAKNREALLKKEVWEYDESCPGCKIDHLKESNPGIPFKLLFYVWIVVLCAALPISSLFPFLYFMIRDFHIAKREEDIGFYAGYVGSSFMFGRALTSVIWGMVADRYGRKPVITAGLIALIIFNTLFGLSTNVWMALSTRFLLGSFCGILGPMRAYASEVCRKEYQALGMSIISTAWGIGLVIGPALGGFLAQPAEKFPHIFSKESLFGRFPYFLPCLLISTFALGVSVLCYWLPETLHIHKENKEQDELYAWEVAAYGCDVKEKLKKFEGKGPNQQQSLLKNWPLMSSIIVYCVFQLHDMAYAEIFSLWAISPSEYGGLSYSTADVGEVLAMSGLGLLLFQLFLYPPLERILGPVMVSRIGAVLTVPLLSSYPLIAMLSGVGLSLLINCASLLKNVLCVSITTGLFLLQNRAVTQQQRGAANGISMSAMSFFKAVGPAGGGSLFSWALKRQNDSFLPGSRMVFFILNIIEVLGLFMTFKPFLTVPGENHP* 491
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi8g00451 490 Pfam Major Facilitator Superfamily 43 437 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Vivi8g00451 490 ProSiteProfiles Major facilitator superfamily (MFS) profile. 39 485 IPR020846 GO:0022857(InterPro)
Vivi8g00451 490 Gene3D MFS general substrate transporter like domains 38 478 IPR036259 -
Vivi8g00451 490 CDD MFS-SLC46-TetA-like 43 479 - -
Vivi8g00451 490 SUPERFAMILY MFS general substrate transporter 38 479 IPR036259 -
Vivi8g00451 490 FunFam Protein ZINC INDUCED FACILITATOR-LIKE 1 38 477 - -
Vivi8g00451 490 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 35 479 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi8g00451 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Vivi Vivi-Chr13:15369916 Vivi8g00451 Vivi-Chr8:11436840 dispersed
Vivi Vivi-Chr13:15444112 Vivi8g00451 Vivi-Chr8:11436840 dispersed