Hierarchical alignments with the <em>Arctium lappa</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Arctium lappa genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.

Query Sequence

Or, Gene ID

Species

Armi_1	Sain_1	Ceso_1	Cati_1	Ccar_1	Cien_1	Cich_1	Lssa_1	Laca_1	Tako_1	Tamo_1	Pslu_1	Lomi_1	Lomi_2	Enbr_1	Ecan_1	Soca_1	Glco_1	Artr_1	Aary_1	Aary_2	Aann_1	Chma_1	Chmo_1	Chmo_2	Chmo_3	Chla_1	Chna_1	Cind_1	Pdy_1	Cobi_1	Hean_1	Bial_1	Bial_2	Dapi_1	Dapi_2	Hetu_1	Hetu_2	Hetu_3	Amtr_1	Smso_1	Smso_2	Taer_1	Fro_1	Fso_1	Ftr_1	Fra_1	Fli_1	Stre_1	Mimi_1	Cobi_2	Hean_2	Bial_3	Bial_4	Dapi_3	Dapi_4	Hetu_4	Hetu_5	Hetu_6	Amtr_2	Smso_3	Smso_4	Taer_2	Fro_2	Fso_2	Ftr_2	Fra_2	Fli_2	Stre_2	Mimi_2
.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Armi1g00600	Sain12g00510	Ceso2g01435	Cati3g00647	Ccar2g01955	.	.	Lssa7g03371	Laca7g02740	Tako4g04042	.	.	.	Lomi2g04400	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Pdy4g00445	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Hean11g00861	.	.	.	.	.	Hetu31g00637	.	.	.	.	.	.	.	.	.	.	.	.
.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Armi1g00602	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

First Previous Page 46 of 3145 Next Last

Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	13790157	13792922	-	AmiAMIRv0_Chr01g0006001	Armi1g00600	600
1	14017450	14018717	+	AmiAMIRv0_Chr01g0006021	Armi1g00602	602
3	7045060	7049447	-	CtAH03T0046400.1	Cati3g00647	647
2	66164048	66187951	-	gnl\|WGS:LEKV\|Ccrd_011002.mRNA.1_mrna	Ccar2g01955	1955
2	29642343	29643642	-	>KAJ9560783.1	Ceso2g01435	1435
11	20257543	20258997	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr11g0475981	Hean11g00861	861
31	25717908	25718627	+	>Htub.h1tg001429l.g223.t1	Hetu31g00637	637
7	130144948	130148856	+	CAI9294928.1	Laca7g02740	2740
2	49320326	49322809	-	LmiAMIRv0_Chr02g0089331	Lomi2g04400	4400
7	177995680	177998830	+	>KAJ0197530.1	Lssa7g03371	3371
4	8355377	8358349	+	PdyAMIRv0_Chr04g0152531	Pdy4g00445	445
12	11541977	11542264	-	SinAMIRv0_Chr12g0360741	Sain12g00510	510
4	91202763	91210396	-	TkA04G362320.2	Tako4g04042	4042

DecoBrowse