Hierarchical alignments with the <em>Vitis vinifera</em> genome as reference

AGRP Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Aster-Orthologous

Genes that are duplicated as concomitant events of species formation and continue to have the same function are called orthologous genes. New gene functions can be caused by duplications that occur within the genome of a single species. Duplications within a genome result in paralogous gene.
Orthogroups, orthologs and paralogs genes were identified using OrthoFinder (v2.5.1). First, the similarity relationship between protein sequences of all species was based on the Blastp similarity score (E-value 1e-5). The sequence alignment program was blast_gz and the conformational tree method was FastTree. MCL graph clustering algorithm (Inflation value >1.5) was used for cluster analysis to obtain single-copy and multi-copy gene families.

Query Sequence

Or, Gene ID

Species

10 orthogroups on this page

Orthogroup	Total	Aann	Aary	Amar	Amtr	Arla	Armi	Artr	Bial	Busi	Cati	Ccar	Ceso	Chla	Chma	Chmo	Chna	Cich	Cien	Cind	Cobi	Cpa	Dapi	Desu	Ecan	Enbr	Eupl	Fbi	Fbr	Ffl	Fli	Fra	Fro	Fso	Ftr	Glco	Hean	Hetu	Heub	Laca	Lasa	Lomi	Lssa	Mimi	Nenu	Nin	Pdy	Pin	Pslu	Sain	Scae	Sesq	Smso	Soca	Stre	Taer	Tako	Tamo	Tesi	Vivi
OG0000540	428	0	0	0	71	0	1	0	52	0	0	0	0	0	0	0	0	0	0	0	2	0	5	0	4	5	0	1	12	21	74	12	19	12	6	0	1	6	0	0	0	0	0	58	0	0	0	14	0	0	3	18	2	26	3	0	0	0	0	0
OG0000541	427	6	8	9	8	7	7	3	13	5	5	6	6	9	10	17	8	3	7	7	9	2	15	6	8	10	3	4	3	1	5	8	9	9	8	9	8	22	3	5	8	10	4	8	3	4	6	6	7	12	6	7	13	7	7	5	12	4	3	4
OG0000542	426	5	7	4	5	4	5	4	24	1	11	3	7	8	20	12	6	12	4	6	7	6	14	5	4	6	4	5	6	5	2	5	4	6	5	5	19	24	2	13	14	2	11	3	2	1	3	1	5	4	7	7	12	12	6	3	30	4	3	1
OG0000543	426	5	9	13	9	4	4	4	14	9	5	4	3	7	9	15	10	4	3	8	8	4	16	8	5	5	7	5	4	6	6	6	8	6	5	9	11	24	5	5	6	8	5	10	11	4	5	4	5	4	5	6	14	6	10	6	6	7	6	6
OG0000544	425	17	33	3	4	2	3	17	11	2	2	2	3	26	34	58	17	2	3	26	4	0	7	3	3	6	1	3	2	1	1	2	2	1	1	16	4	16	8	3	3	5	2	3	1	2	2	7	9	6	3	10	3	4	6	2	4	3	0	1
OG0000545	425	10	9	14	10	6	7	8	11	0	2	7	5	17	2	36	6	6	9	5	6	3	9	13	2	0	0	9	9	13	9	10	7	8	7	13	8	19	6	2	2	2	2	4	3	7	6	6	9	6	8	8	10	6	7	10	1	2	1	2
OG0000546	424	8	28	0	0	8	11	53	0	9	6	0	1	37	19	58	16	0	0	30	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	8	0	0	0	28	32	0	23	0	8	27	1	0	0	3	0	1	0	0	0	0	2	1	2	0
OG0000547	424	13	21	0	11	6	4	39	2	0	18	4	15	16	9	18	3	7	0	7	4	6	6	5	0	1	1	9	8	12	6	20	9	11	9	7	3	3	8	3	3	5	9	3	2	1	6	8	8	6	11	13	7	8	0	4	2	3	1	0
OG0000548	424	10	17	0	6	7	6	15	10	3	7	3	5	15	16	28	9	5	5	9	4	3	17	6	8	1	5	1	2	5	3	2	2	2	3	12	8	6	5	10	10	4	4	2	7	1	2	8	8	10	10	13	5	18	7	6	6	10	11	1
OG0000549	424	12	18	0	5	7	6	21	15	3	3	7	3	12	3	63	3	5	5	7	5	6	12	4	5	2	3	5	6	5	4	5	5	4	5	6	7	16	5	5	5	8	6	8	3	3	5	6	5	6	6	7	12	6	6	4	6	2	3	4