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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00161 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00162 Cobi2g02312 Bial10g01333 Bial22g00923 . Dapi20g01820 Hetu1g00160 Hetu2g00209 Hetu3g00154 Amtr12g00451 Smso1g03635 Smso28g00470 . . . . . . Stre1g04364 Mimi16g02127 . . . . . . . . . . . . . . . . . . . .
Hean1g00163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00164 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00165 Cobi2g02313 . . . . . . . Amtr12g00454 . . . . . . . . Stre1g04365 Mimi16g02128 . . . . . . . . . . . . . . . . . . . .
Hean1g00166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00167 . . . . . . . . . . . . Fro14g01313 Fso1g02138 Ftr2g00666 Fra18g01658 Fli3g00740 . . . . . . . . . . . . . . . . . . . . . .
Hean1g00168 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00169 Cobi2g02314 Bial10g01341 . . Dapi20g01823 . . . Amtr12g00460 . . Taer4g02426 Fro14g01314 Fso1g02140 Ftr2g00663 Fra18g01657 Fli3g00739 Stre1g04366 . . . . . . . . . . . . . . . . . . . . .
Hean1g00170 Cobi2g02317 Bial10g01342 . . . . . . . . . Taer4g02427 Fro14g01315 Fso1g02141 Ftr2g00661 Fra18g01656 Fli3g00738 . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
12 14817282 14820644 + AtrifAMIRv0_Chr12g0721831 Amtr12g00451 451
12 14916079 14919646 + AtrifAMIRv0_Chr12g0721861 Amtr12g00454 454
12 14990184 14990492 - AtrifAMIRv0_Chr12g0721921 Amtr12g00460 460
10 13324424 13327086 + g86836.t1 Bial10g01333 1333
10 13427658 13429388 - g86828.t1 Bial10g01341 1341
10 13437901 13438209 + g86827.t1 Bial10g01342 1342
22 8896606 8899442 + g147111.t1 Bial22g00923 923
2 70621604 70624184 + h2tg000016l_1.g4934.t1 Cobi2g02312 2312
2 70671005 70674177 + h2tg000016l_1.g4933.t1 Cobi2g02313 2313
2 70677089 70677397 - h2tg000016l_1.g4932.t1 Cobi2g02314 2314
2 70761346 70761657 + h2tg000016l_1.g4929.t1 Cobi2g02317 2317
20 107976736 107979731 + h1tg000169l.g129577.t1 Dapi20g01820 1820
20 108136208 108136516 - h1tg000169l.g129574.t1 Dapi20g01823 1823
3 20273250 20273558 + FliAMIRv0_Chr03g0080071 Fli3g00738 738
3 20275575 20275883 - FliAMIRv0_Chr03g0080081 Fli3g00739 739
3 20338276 20338584 - FliAMIRv0_Chr03g0080091 Fli3g00740 740
18 63708194 63708502 + FraAMIRv0_Chr18g0358531 Fra18g01656 1656
18 63710710 63711018 - FraAMIRv0_Chr18g0358541 Fra18g01657 1657
18 63719457 63719765 - FraAMIRv0_Chr18g0358551 Fra18g01658 1658
14 20877755 20878063 + FroAMIRv0_Chr14g0254671 Fro14g01313 1313
14 20891000 20891308 + FroAMIRv0_Chr14g0254681 Fro14g01314 1314
14 20895811 20896077 - FroAMIRv0_Chr14g0254691 Fro14g01315 1315
1 61564755 61565063 + FsoAMIRv0_Chr01g0021371 Fso1g02138 2138
1 61584651 61584959 + FsoAMIRv0_Chr01g0021391 Fso1g02140 2140
1 61591894 61592160 - FsoAMIRv0_Chr01g0021401 Fso1g02141 2141
2 12405636 12405944 + FtrAMIRv0_Chr02g0035281 Ftr2g00661 661
2 12411703 12412011 + FtrAMIRv0_Chr02g0035301 Ftr2g00663 663
2 12462137 12462445 + FtrAMIRv0_Chr02g0035331 Ftr2g00666 666
1 3910690 3915158 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001861 Hean1g00161 161
1 3933237 3937740 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001871 Hean1g00162 162
1 4012182 4013868 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001881 Hean1g00163 163
1 4025555 4029309 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001891 Hean1g00164 164
1 4033513 4037487 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001901 Hean1g00165 165
1 4043609 4044073 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001911 Hean1g00166 166
1 4119212 4119520 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001921 Hean1g00167 167
1 4163915 4175569 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001931 Hean1g00168 168
1 4175230 4175538 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001941 Hean1g00169 169
1 4217412 4217884 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0001951 Hean1g00170 170
1 6418904 6423121 + >Htub.h1tg003050l.g424.t1 Hetu1g00160 160
2 6634173 6638470 + >Htub.h1tg000710l.g92.t1 Hetu2g00209 209
3 5764224 5768381 + >Htub.h1tg000727l.g54.t1 Hetu3g00154 154
16 83730815 83734585 + KAD3338197.1 Mimi16g02127 2127
16 83762090 83762734 + KAD3338198.1 Mimi16g02128 2128
1 121818172 121821293 + KAI3829598.1 Smso1g03635 3635
28 12797468 12800792 - KAI3682750.1 Smso28g00470 470
1 129985846 129988899 + Streb.1G043640.1 Stre1g04364 4364
1 130033839 130037579 + Streb.1G043650.1 Stre1g04365 4365
1 130044097 130044720 - Streb.1G043660.1 Stre1g04366 4366
4 54607307 54607615 + >KAK1428207.1 Taer4g02426 2426
4 54611388 54611696 - >KAK1428208.1 Taer4g02427 2427
       
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