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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00651 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00652 Cobi2g02095 Bial10g01157 Bial22g00763 Dapi4g01671 Dapi20g01606 Hetu1g01595 Hetu2g01370 Hetu3g01393 Amtr02g08746 Smso1g03437 . . Fro14g01102 . . Fra18g01395 Fli3g01019 Stre1g04147 . . . . . . . . . . . . . . . . . . . . .
Hean1g00653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00654 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00656 . . . Dapi4g01672 Dapi20g01607 Hetu1g01590 Hetu2g01367 Hetu3g01390 Amtr02g08742 Smso1g03440 Smso28g00579 . Fro14g01105 Fso1g01749 Ftr2g01206 Fra18g01393 Fli3g01018 Stre1g04151 . . . . . . . . . . . . . . . . . . . . .
Hean1g00657 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00658 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00659 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00660 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
2 170015773 170016781 - AtrifAMIRv0_Chr02g0183381 Amtr02g08742 8742
2 170148889 170150286 - AtrifAMIRv0_Chr02g0183421 Amtr02g08746 8746
10 11556410 11560537 + g87012.t1 Bial10g01157 1157
22 7310195 7319311 + g147271.t1 Bial22g00763 763
2 64864625 64868660 + h2tg000016l_1.g5151.t1 Cobi2g02095 2095
4 103381404 103384945 + h2tg000160l.g57256.t1 Dapi4g01671 1671
4 103439834 103442069 + h2tg000160l.g57257.t1 Dapi4g01672 1672
20 95108777 95112141 + h2tg000075l.g16976.t1 Dapi20g01606 1606
20 95162904 95165161 + h2tg000075l.g16977.t1 Dapi20g01607 1607
3 31185518 31273746 - FliAMIRv0_Chr03g0082871 Fli3g01018 1018
3 31332711 31336080 - FliAMIRv0_Chr03g0082881 Fli3g01019 1019
18 52250992 52320059 - FraAMIRv0_Chr18g0355901 Fra18g01393 1393
18 52345653 52349029 - FraAMIRv0_Chr18g0355921 Fra18g01395 1395
14 17428841 17433736 + FroAMIRv0_Chr14g0252561 Fro14g01102 1102
14 17470063 17511661 + FroAMIRv0_Chr14g0252591 Fro14g01105 1105
1 50618121 50619633 + FsoAMIRv0_Chr01g0017481 Fso1g01749 1749
2 31905504 31907569 - FtrAMIRv0_Chr02g0040731 Ftr2g01206 1206
1 33708467 33708953 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007381 Hean1g00651 651
1 33712277 33716628 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007391 Hean1g00652 652
1 33725942 33726935 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007401 Hean1g00653 653
1 33749838 33751928 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007421 Hean1g00654 654
1 33759091 33760817 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007431 Hean1g00655 655
1 33767964 33770583 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007441 Hean1g00656 656
1 33822856 33824674 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007451 Hean1g00657 657
1 33829930 33834246 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007461 Hean1g00658 658
1 33832459 33833299 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007471 Hean1g00659 659
1 33837019 33838972 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007481 Hean1g00660 660
1 86313975 86321176 - >Htub.h1tg002297l.g228.t1 Hetu1g01590 1590
1 86411505 86412694 - >Htub.h1tg002297l.g233.t1 Hetu1g01595 1595
2 76824692 76826781 - >Htub.h1tg000330l.g404.t1 Hetu2g01367 1367
2 76969526 76972428 - >Htub.h1tg000330l.g401.t1 Hetu2g01370 1370
3 75776259 75778552 - >Htub.h1tg000150l.g103.t1 Hetu3g01390 1390
3 75916297 75917201 - >Htub.h1tg000150l.g100.t1 Hetu3g01393 1393
1 117562690 117568305 + KAI3829400.1 Smso1g03437 3437
1 117595970 117598079 + KAI3829403.1 Smso1g03440 3440
28 19530638 19533860 - KAI3682859.1 Smso28g00579 579
1 126602225 126605794 + Streb.1G041470.1 Stre1g04147 4147
1 126633548 126636482 + Streb.1G041510.1 Stre1g04151 4151
       
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