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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

AAGs Reconstruction Pipeline

A Standardized Workflow for Ancestral Genome Reconstruction

01

WGDs Determination

Analyze and determine whole genome duplication events (refer to WGD pipeline).

Go to WGD Pipeline
02

Identify Anchored Gene Pairs

Perform homology search to identify anchored gene pairs across genomes using Blast.

Run Blast
03

SBs Identification

Infer and analyze synteny blocks (SBs) based on anchored gene pairs.

Run Correspondence
04

Largest Contiguous Regions

Identify paleo-genes and determine the largest contiguous regions.

Run Paleo-gene Identifier
05

Inferring CARs

Analyze block information to infer Contiguous Ancestral Regions (CARs).

Run Block_info
06

Construct Ancestral Genomes

Reconstruct and visualize ancestral genomes using MGA-circos.

Run MGA-circos