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Asteraceae Genomic Research Platform

Gene Search

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Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.


Select Eupl_1 Eupl_2 Nenu_1 Nenu_2 Tesi_1 Tesi_2 Tesi_3 Tesi_4 Busi_1 Busi_2 Vivi_1 Vivi_2 Vivi_3 Nin_1 Nin_2 Nin_3 Arla_1 Arla_2 Arla_3 Arla_4 Arla_5 Arla_6 Arla_7 Arla_8 Arla_9
Eupl14g01060 . Nenu1g00597 . . Tesi1g00901 . . . . . . . . . . . . . . . . . . .
Eupl14g01061 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01062 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01063 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01064 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01065 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01066 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01067 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01068 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01069 . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
14 18125549 18151972 - evm.model.CTG_446.104 Eupl14g01060 1060
14 18163111 18163309 + evm.model.CTG_405.27 Eupl14g01061 1061
14 18297745 18301324 - evm.model.CTG_405.24 Eupl14g01062 1062
14 18316806 18317495 - evm.model.CTG_405.23 Eupl14g01063 1063
14 18347361 18356786 + evm.model.CTG_405.22 Eupl14g01064 1064
14 18400011 18407689 + evm.model.CTG_405.19 Eupl14g01065 1065
14 18459612 18460965 + evm.model.CTG_405.16 Eupl14g01066 1066
14 18464107 18467399 + evm.model.CTG_405.15 Eupl14g01067 1067
14 18528136 18529860 + evm.model.CTG_405.13 Eupl14g01068 1068
14 18555687 18566520 + evm.model.CTG_405.11 Eupl14g01069 1069
1 16576995 16592626 - OF00611.mRNA1 Nenu1g00597 597
1 20509275 20511471 + Tesin01G0094800.1 Tesi1g00901 901
       
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