AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.


Select Eupl_1 Eupl_2 Nenu_1 Nenu_2 Tesi_1 Tesi_2 Tesi_3 Tesi_4 Busi_1 Busi_2 Vivi_1 Vivi_2 Vivi_3 Nin_1 Nin_2 Nin_3 Arla_1 Arla_2 Arla_3 Arla_4 Arla_5 Arla_6 Arla_7 Arla_8 Arla_9
Eupl14g01350 . . . . . . None . . . . . . Nin9g02289 . . . . . . . . . .
Eupl14g01351 . . . . . . None . . . . . . . . . . . . . . . . .
Eupl14g01352 . . . . . . None . . . . . . . . . . . . . . . . .
Eupl14g01353 . . . . . . None . . . . . . . . . . . . . . . . .
   
First Page 2511 of 2511 Next Last
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
14 31498695 31507443 + evm.model.CTG_394.1 Eupl14g01350 1350
14 31575341 31581578 + evm.model.CTG_431.4 Eupl14g01351 1351
14 31672985 31689503 + evm.model.CTG_431.5 Eupl14g01352 1352
14 31707464 31711645 - evm.model.CTG_76.5 Eupl14g01353 1353
9 34576545 34591289 + NinS26739.t1 Nin9g02289 2289
       
DecoBrowse