Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01340	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01341	.	.	.	.	.	.	None	.	Busi8g00867	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01342	.	.	.	.	.	.	None	.	Busi8g00865	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01343	.	.	.	.	.	.	None	.	Busi8g00864	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01344	.	.	.	.	.	.	None	.	Busi8g00608	.	.	.	.	Nin9g02285	.	.	.	.	.	.	.	.	.	.
Eupl14g01345	.	.	.	.	.	.	None	.	Busi8g00862	.	.	.	.	Nin9g02287	.	.	.	.	.	.	.	.	.	.
Eupl14g01346	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01347	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01348	.	.	.	.	.	.	None	.	Busi8g00612	.	.	.	.	Nin9g02288	.	.	.	.	.	.	.	.	.	.
Eupl14g01349	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

First Previous Page 2510 of 2511 Next Last

Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	8234682	8237262	+	BUSI_016093-RA	Busi8g00608	608
8	8333545	8336807	+	BUSI_016099-RA	Busi8g00612	612
8	13343488	13346935	-	BUSI_016348-RA	Busi8g00862	862
8	13364633	13369879	-	BUSI_016349-RA	Busi8g00864	864
8	13408050	13409379	+	BUSI_016351-RA	Busi8g00865	865
8	13373924	13402940	+	BUSI_016350-RA	Busi8g00867	867
14	31192230	31212820	-	evm.model.CTG_394.12	Eupl14g01340	1340
14	31222343	31295017	+	evm.model.CTG_394.10	Eupl14g01341	1341
14	31298402	31299806	+	evm.model.CTG_394.9	Eupl14g01342	1342
14	31309909	31320997	-	evm.model.CTG_394.8	Eupl14g01343	1343
14	31363990	31368905	+	evm.model.CTG_394.7	Eupl14g01344	1344
14	31394554	31407750	+	evm.model.CTG_394.6	Eupl14g01345	1345
14	31411609	31415833	-	evm.model.CTG_394.5	Eupl14g01346	1346
14	31420490	31429370	-	evm.model.CTG_394.4	Eupl14g01347	1347
14	31448955	31452776	+	evm.model.CTG_394.3	Eupl14g01348	1348
14	31454991	31497804	+	evm.model.CTG_394.2	Eupl14g01349	1349
9	34553825	34560860	+	NinS26735.t1	Nin9g02285	2285
9	34561015	34566444	+	NinS26737.t1	Nin9g02287	2287
9	34570559	34573177	+	NinS26738.t1	Nin9g02288	2288

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