Hierarchical alignments with the <em>Helianthus annuus</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Helianthus annuus genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.

Query Sequence

Or, Gene ID

Species

Hean_1	Cobi_1	Bial_1	Bial_2	Dapi_1	Dapi_2	Hetu_1	Hetu_2	Hetu_3	Amtr_1	Smso_1	Smso_2	Taer_1	Fro_1	Fso_1	Ftr_1	Fra_1	Fli_1	Stre_1	Mimi_1	Hean_2	Cobi_2	Bial_3	Bial_4	Dapi_3	Dapi_4	Hetu_4	Hetu_5	Hetu_6	Amtr_2	Smso_3	Smso_4	Taer_2	Fro_2	Fso_2	Ftr_2	Fra_2	Fli_2	Stre_2	Mimi_2
Hean1g00571	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00572	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00573	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00574	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00575	.	.	.	.	.	.	.	.	Amtr02g08889	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00576	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00577	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00578	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00579	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00580	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	173181831	173185586	-	AtrifAMIRv0_Chr02g0184851	Amtr02g08889	8889
1	29391377	29392054	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0006481	Hean1g00571	571
1	29447950	29452231	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0006491	Hean1g00572	572
1	29621136	29622353	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0006501	Hean1g00573	573
1	29623967	29626759	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0006511	Hean1g00574	574
1	29626802	29627446	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0006521	Hean1g00575	575
1	29630254	29633628	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0006531	Hean1g00576	576
1	29635595	29637503	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0006541	Hean1g00577	577
1	29639272	29641412	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0006551	Hean1g00578	578
1	29779933	29780996	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0006571	Hean1g00579	579
1	29781265	29782282	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0006581	Hean1g00580	580

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