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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean17g04431 Cobi5g00059 Bial21g02665 Bial9g02755 . Dapi21g00081 Hetu50g03632 Hetu51g03998 . . Smso4g01292 Smso21g01261 Taer9g03156 Fro13g00082 Fso12g00082 Ftr6g00057 Fra13g00743 Fli9g00079 Stre11g00094 . . . . . . . . . . . . . . . . . . . . .
Hean17g04432 Cobi5g02914 . Bial9g02753 . . Hetu50g03631 Hetu51g03997 Hetu49g03906 . . . . . . . . . . Mimi2g00054 . . . . . . . . . . . . . . . . . . . .
Hean17g04433 . . . . Dapi21g00082 . . . Amtr10g04093 Smso4g01293 Smso21g01262 . . . . . . Stre11g00095 . . . . . . . . . . . . . . . . . . . . .
Hean17g04434 Cobi5g02913 . Bial9g02750 . Dapi21g00083 Hetu50g03630 Hetu51g03996 Hetu49g03904 Amtr10g04094 Smso4g01294 Smso21g01263 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean17g04435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean17g04436 Cobi5g02912 . Bial9g02749 . . . . . Amtr10g04095 Smso4g01296 Smso21g01264 Taer9g03153 Fro13g00084 Fso12g00084 . Fra13g00742 Fli9g00080 Stre11g00096 . . . . . . . . . . . . . . . . . . . . .
Hean17g04437 Cobi5g00063 Bial18g00069 Bial9g02748 . Dapi21g00085 Hetu50g03627 Hetu51g03994 Hetu49g03902 Amtr10g04096 Smso4g01297 Smso21g01265 . . . . . . Stre11g00097 Mimi2g00057 . . . . . . . . . . . . . . . . . . . .
Hean17g04438 Cobi5g00064 Bial18g00070 Bial9g02747 . Dapi21g00086 Hetu50g03626 . Hetu49g03900 . Smso4g01298 Smso21g01267 Taer9g03151 Fro13g00086 Fso12g00086 Ftr6g00061 Fra13g00740 Fli9g00084 Stre11g00098 Mimi2g00058 . . . . . . . . . . . . . . . . . . . .
Hean17g04439 Cobi5g00066 Bial18g00075 Bial9g02746 . Dapi21g00087 Hetu50g03625 Hetu51g03993 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean17g04440 Cobi5g00067 Bial21g02664 Bial9g02745 . Dapi21g00088 Hetu50g03624 Hetu51g03992 Hetu49g03899 . Smso4g01300 Smso21g01269 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
10 95127188 95127649 + AtrifAMIRv0_Chr10g0664671 Amtr10g04093 4093
10 95136047 95149204 - AtrifAMIRv0_Chr10g0664681 Amtr10g04094 4094
10 95219596 95221072 + AtrifAMIRv0_Chr10g0664691 Amtr10g04095 4095
10 95233865 95241578 + AtrifAMIRv0_Chr10g0664701 Amtr10g04096 4096
9 72972105 72981938 + g77125.t1 Bial9g02745 2745
9 72986494 72988050 - g77126.t1 Bial9g02746 2746
9 72992610 72996192 - g77127.t1 Bial9g02747 2747
9 73004241 73009276 - g77128.t1 Bial9g02748 2748
9 73010942 73013900 - g77129.t1 Bial9g02749 2749
9 73026803 73039392 + g77130.t1 Bial9g02750 2750
9 73051788 73054980 - g77133.t1 Bial9g02753 2753
9 73096534 73101363 - g77135.t1 Bial9g02755 2755
18 1081533 1082060 + g121647.t1 Bial18g00069 69
18 1097233 1100427 + g121646.t1 Bial18g00070 70
18 1131765 1132787 + g121641.t1 Bial18g00075 75
21 70168667 70180241 + g62432.t1 Bial21g02664 2664
21 70220839 70225670 - g52064.t1 Bial21g02665 2665
5 1134639 1136847 + h2tg000038l_1.g23827.t1 Cobi5g00059 59
5 1198767 1203666 + h2tg000038l_1.g23823.t1 Cobi5g00063 63
5 1214583 1217621 + h2tg000038l_1.g23822.t1 Cobi5g00064 64
5 1227996 1229021 + h2tg000038l_1.g23820.t1 Cobi5g00066 66
5 1232864 1243210 - h2tg000038l_1.g23819.t1 Cobi5g00067 67
5 80063589 80065562 - h2tg000020l_1.g9868.t1 Cobi5g02912 2912
5 80070733 80081821 + h2tg000020l_1.g9867.t1 Cobi5g02913 2913
5 80086289 80088874 - h2tg000020l_1.g9866.t1 Cobi5g02914 2914
21 1635902 1638641 + h1tg000096l.g113481.t1 Dapi21g00081 81
21 1641049 1644223 + h1tg000096l.g113480.t1 Dapi21g00082 82
21 1645821 1660123 - h1tg000096l.g113479.t1 Dapi21g00083 83
21 1688097 1694401 + h1tg000096l.g113477.t1 Dapi21g00085 85
21 1722507 1726936 + h1tg000096l.g113476.t1 Dapi21g00086 86
21 1769257 1770192 + h1tg000096l.g113475.t1 Dapi21g00087 87
21 1774867 1790012 - h1tg000096l.g113474.t1 Dapi21g00088 88
9 1756483 1758441 + FliAMIRv0_Chr09g0208461 Fli9g00079 79
9 1770339 1771716 + FliAMIRv0_Chr09g0208471 Fli9g00080 80
9 1846928 1850370 + FliAMIRv0_Chr09g0208511 Fli9g00084 84
13 34756535 34759731 - FraAMIRv0_Chr13g0260481 Fra13g00740 740
13 34779394 34780729 - FraAMIRv0_Chr13g0260501 Fra13g00742 742
13 34790741 34792062 - FraAMIRv0_Chr13g0260511 Fra13g00743 743
13 1095828 1097173 + FroAMIRv0_Chr13g0222661 Fro13g00082 82
13 1108234 1109579 + FroAMIRv0_Chr13g0222681 Fro13g00084 84
13 1139072 1142362 + FroAMIRv0_Chr13g0222701 Fro13g00086 86
12 1358428 1359747 + FsoAMIRv0_Chr12g0290471 Fso12g00082 82
12 1375192 1376582 + FsoAMIRv0_Chr12g0290491 Fso12g00084 84
12 1400632 1404247 + FsoAMIRv0_Chr12g0290511 Fso12g00086 86
6 676772 678945 + FtrAMIRv0_Chr06g0162071 Ftr6g00057 57
6 713933 717114 + FtrAMIRv0_Chr06g0162111 Ftr6g00061 61
17 191230649 191236127 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0830111 Hean17g04431 4431
17 191242520 191243435 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0830121 Hean17g04432 4432
17 191244599 191246544 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0830131 Hean17g04433 4433
17 191249329 191270604 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0830151 Hean17g04434 4434
17 191304675 191306346 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0830161 Hean17g04435 4435
17 191344199 191346049 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0830171 Hean17g04436 4436
17 191374856 191387099 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0830181 Hean17g04437 4437
17 191404390 191408478 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0830191 Hean17g04438 4438
17 191431296 191432774 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0830201 Hean17g04439 4439
17 191436377 191461483 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr17g0830211 Hean17g04440 4440
49 224148026 224170447 + >Htub.h1tg004177l.g158.t1 Hetu49g03899 3899
49 224188767 224194986 - >Htub.h1tg004177l.g156.t1 Hetu49g03900 3900
49 224240317 224245729 - >Htub.h1tg004177l.g154.t1 Hetu49g03902 3902
49 224400910 224401512 + >Htub.h1tg004026l.g209.t1 Hetu49g03904 3904
49 224422583 224427965 - >Htub.h1tg004026l.g211.t1 Hetu49g03906 3906
50 210316840 210343457 + >Htub.h1tg000531l.g427.t1 Hetu50g03624 3624
50 210348341 210349684 - >Htub.h1tg000531l.g428.t1 Hetu50g03625 3625
50 210367285 210373157 - >Htub.h1tg000531l.g429.t1 Hetu50g03626 3626
50 210474333 210482868 - >Htub.h1tg000531l.g430.t1 Hetu50g03627 3627
50 210610709 210629651 + >Htub.h1tg000531l.g433.t1 Hetu50g03630 3630
50 210631850 210635300 - >Htub.h1tg000531l.g434.t1 Hetu50g03631 3631
50 210660299 210664109 - >Htub.h1tg000531l.g435.t1 Hetu50g03632 3632
51 231406416 231411291 + >Htub.h1tg000558l.g226.t1 Hetu51g03992 3992
51 231417221 231418570 - >Htub.h1tg000558l.g227.t1 Hetu51g03993 3993
51 231531877 231540780 - >Htub.h1tg000558l.g229.t1 Hetu51g03994 3994
51 231694982 231695488 + >Htub.h1tg000558l.g231.t1 Hetu51g03996 3996
51 231714857 231719956 - >Htub.h1tg000558l.g233.t1 Hetu51g03997 3997
51 231726691 231730426 - >Htub.h1tg000558l.g234.t1 Hetu51g03998 3998
2 1556325 1559038 + KAD7116470.1 Mimi2g00054 54
2 1585943 1591981 + KAD7116473.1 Mimi2g00057 57
2 1608341 1608793 + KAD7116474.1 Mimi2g00058 58
4 17240459 17241789 + KAI3818145.1 Smso4g01292 1292
4 17244059 17246825 + KAI3818146.1 Smso4g01293 1293
4 17254460 17278829 - KAI3818147.1 Smso4g01294 1294
4 17306159 17307816 + KAI3818149.1 Smso4g01296 1296
4 17321621 17329847 + KAI3818150.1 Smso4g01297 1297
4 17374893 17378153 + KAI3818151.1 Smso4g01298 1298
4 17425606 17452829 - KAI3818153.1 Smso4g01300 1300
21 13157067 13160307 + KAI3731467.1 Smso21g01261 1261
21 13162660 13165018 + KAI3731468.1 Smso21g01262 1262
21 13168681 13184139 - KAI3731469.1 Smso21g01263 1263
21 13199554 13201122 + KAI3731470.1 Smso21g01264 1264
21 13202829 13210424 + KAI3731471.1 Smso21g01265 1265
21 13235935 13239833 + KAI3731473.1 Smso21g01267 1267
21 13265415 13282020 - KAI3731475.1 Smso21g01269 1269
11 2515582 2517457 + Streb.11G000940.1 Stre11g00094 94
11 2519143 2522247 + Streb.11G000950.1 Stre11g00095 95
11 2525565 2527187 + Streb.11G000960.1 Stre11g00096 96
11 2533150 2539375 + Streb.11G000970.1 Stre11g00097 97
11 2586896 2594048 + Streb.11G000980.1 Stre11g00098 98
9 31539062 31543582 - >KAK1413786.1 Taer9g03151 3151
9 31560601 31561839 - >KAK1413788.1 Taer9g03153 3153
9 31576991 31577601 - >KAK1413791.1 Taer9g03156 3156
       
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