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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Arctium lappa genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.


Select Armi_1 Sain_1 Ceso_1 Cati_1 Ccar_1 Cien_1 Cich_1 Lssa_1 Laca_1 Tako_1 Tamo_1 Pslu_1 Lomi_1 Lomi_2 Enbr_1 Ecan_1 Soca_1 Glco_1 Artr_1 Aary_1 Aary_2 Aann_1 Chma_1 Chmo_1 Chmo_2 Chmo_3 Chla_1 Chna_1 Cind_1 Pdy_1 Cobi_1 Hean_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Cobi_2 Hean_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Armi18g00089 Sain8g02128 . Cati1g00083 Ccar5g01560 Cien7g02475 . Lssa3g03368 . Tako6g02857 Tamo6g02430 Pslu2g14225 . . Enbr1g08995 Ecan8g02622 Soca4g03344 Glco7g02004 Artr9g04533 . . Aann3g01572 . . . . . . . Pdy3g03040 Cobi3g02243 Hean15g01293 Bial14g01367 . . . . . . Amtr08g03948 . . Taer5g00726 Fro11g01671 Fso10g02360 Ftr12g02530 Fra7g01706 Fli2g01975 Stre11g01626 Mimi1g01832 . . . . . . . . . . . . . . . . . . . .
Armi18g00088 Sain8g02126 Ceso1g00054 . Ccar5g01561 . . Lssa3g03367 . Tako6g02858 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi18g00087 Sain8g02125 Ceso1g00053 Cati1g00082 Ccar5g01562 Cien7g02477 . Lssa3g03359 . Tako6g02861 . Pslu2g14223 . . Enbr1g08996 Ecan8g02623 Soca4g03345 Glco7g02007 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi18g00086 Sain8g02124 Ceso1g00051 . Ccar5g01563 . . . . . . Pslu2g14207 Lomi6g01983 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi18g00085 Sain8g02123 Ceso1g00050 Cati1g00080 Ccar5g01564 Cien7g02480 Cich8g01608 Lssa3g03521 Laca3g02759 Tako6g02878 Tamo6g02437 Pslu2g14206 . . Enbr1g08997 Ecan8g02625 Soca4g03349 Glco7g02011 Artr9g04540 Aary7g02315 Aary15g02218 Aann3g01584 . . . . . . . Pdy3g03044 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi18g00084 Sain8g02122 Ceso1g00049 Cati1g00078 Ccar5g01565 Cien7g02482 Cich8g01610 Lssa3g03524 Laca3g02761 Tako6g02883 Tamo6g02438 Pslu2g14204 Lomi6g01981 . Enbr1g08999 Ecan8g02627 Soca4g03350 Glco7g02017 Artr9g04554 Aary7g02316 Aary15g02219 Aann3g01585 . . . . . . . Pdy3g03045 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Armi18g00083 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Armi18g00079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
3 100510570 100512672 - chr3g0634941 Aann3g01572 1572
3 100589366 100594509 - chr3g0635141 Aann3g01584 1584
3 100618612 100623287 + chr3g0635181 Aann3g01585 1585
7 199843984 199849262 - Aargg7g23150.1 Aary7g02315 2315
7 199924874 199928166 + Aargg7g23160.1 Aary7g02316 2316
15 171974783 171979601 - Aargg15g22180.1 Aary15g02218 2218
15 172092915 172096877 + Aargg15g22190.1 Aary15g02219 2219
8 106459841 106465490 - AtrifAMIRv0_Chr08g0555301 Amtr08g03948 3948
18 1481764 1482472 - AmiAMIRv0_Chr18g0470121 Armi18g00079 79
18 1510311 1510733 + AmiAMIRv0_Chr18g0470161 Armi18g00083 83
18 1511465 1517362 - AmiAMIRv0_Chr18g0470171 Armi18g00084 84
18 1543827 1550330 + AmiAMIRv0_Chr18g0470181 Armi18g00085 85
18 1552847 1553248 - AmiAMIRv0_Chr18g0470191 Armi18g00086 86
18 1556580 1560523 - AmiAMIRv0_Chr18g0470201 Armi18g00087 87
18 1571472 1581463 + AmiAMIRv0_Chr18g0470211 Armi18g00088 88
18 1583608 1585647 + AmiAMIRv0_Chr18g0470221 Armi18g00089 89
9 181143536 181145410 - AtridAMIRv0_Chr09g1090761 Artr9g04533 4533
9 181211848 181214780 - AtridAMIRv0_Chr09g1090831 Artr9g04540 4540
9 181430113 181433888 + AtridAMIRv0_Chr09g1090971 Artr9g04554 4554
14 25841886 25844282 + g101473.t1 Bial14g01367 1367
1 526740 532677 - CtAH01T0005800.1 Cati1g00078 78
1 544581 553145 + CtAH01T0006000.1 Cati1g00080 80
1 562228 566646 - CtAH01T0006100.1 Cati1g00082 82
1 567270 602215 + CtAH01T0006200.1 Cati1g00083 83
5 36727129 36729234 - gnl|WGS:LEKV|Ccrd_019255.mRNA.1_mrna Ccar5g01560 1560
5 36732867 36742541 - gnl|WGS:LEKV|Ccrd_019256.mRNA.1_mrna Ccar5g01561 1561
5 36750574 36757012 + gnl|WGS:LEKV|Ccrd_019257.mRNA.1_mrna Ccar5g01562 1562
5 36759550 36759951 + gnl|WGS:LEKV|Ccrd_019258.mRNA.1_mrna Ccar5g01563 1563
5 36762443 36773375 - gnl|WGS:LEKV|Ccrd_019259.mRNA.1_mrna Ccar5g01564 1564
5 36781314 36787820 + gnl|WGS:LEKV|Ccrd_019260.mRNA.1_mrna Ccar5g01565 1565
1 547075 552020 - >KAJ9564152.1 Ceso1g00049 49
1 563552 570047 + >KAJ9564147.1 Ceso1g00050 50
1 578672 579121 - >KAJ9564150.1 Ceso1g00051 51
1 583616 588430 - >KAJ9564210.1 Ceso1g00053 53
1 595019 604723 + >KAJ9564205.1 Ceso1g00054 54
8 53048818 53051735 - KAI3699854.1 Cich8g01608 1608
8 53091485 53094675 + KAI3699856.1 Cich8g01610 1610
7 37357440 37359282 - KAI3503500.1 Cien7g02475 2475
7 37374380 37377908 + KAI3503502.1 Cien7g02477 2477
7 37399066 37401576 - KAI3503505.1 Cien7g02480 2480
7 37416289 37419202 + KAI3503507.1 Cien7g02482 2482
3 70025120 70028705 - h2tg000002l_1.g22328.t1 Cobi3g02243 2243
8 37261223 37263502 - XM_043752313.1 Ecan8g02622 2622
8 37268794 37272575 + XM_043751662.1 Ecan8g02623 2623
8 37278324 37281891 - XM_043751435.1 Ecan8g02625 2625
8 37293360 37297619 + XM_043750301.1 Ecan8g02627 2627
1 278976245 278976760 - evm.model.ctg1025.1 Enbr1g08995 8995
1 278981072 278984464 + evm.model.ctg1025.2 Enbr1g08996 8996
1 279001068 279003853 - evm.model.ctg1025.4 Enbr1g08997 8997
1 279053738 279057801 + evm.model.ctg1025.6 Enbr1g08999 8999
2 35940844 35943232 + FliAMIRv0_Chr02g0053991 Fli2g01975 1975
7 74438820 74441167 - FraAMIRv0_Chr07g0115701 Fra7g01706 1706
11 15108152 15110706 + FroAMIRv0_Chr11g0177151 Fro11g01671 1671
10 65635223 65637534 - FsoAMIRv0_Chr10g0240761 Fso10g02360 2360
12 88684156 88686506 - FtrAMIRv0_Chr12g0356401 Ftr12g02530 2530
7 337806852 337808683 - GcoAMIRv0_Chr07g0467891 Glco7g02004 2004
7 337836231 337838331 + GcoAMIRv0_Chr07g0467921 Glco7g02007 2007
7 337980316 337983510 - GcoAMIRv0_Chr07g0467961 Glco7g02011 2011
7 338103324 338106996 + GcoAMIRv0_Chr07g0468021 Glco7g02017 2017
15 30827299 30831298 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr15g0685691 Hean15g01293 1293
3 113532609 113537422 - CAI9277118.1 Laca3g02759 2759
3 113962633 113966249 + CAI9277120.1 Laca3g02761 2761
6 27874827 27877432 - LmiAMIRv0_Chr06g0206191 Lomi6g01981 1981
6 27893042 27893428 - LmiAMIRv0_Chr06g0206211 Lomi6g01983 1983
3 178941183 178943663 - >KAJ0215503.1 Lssa3g03359 3359
3 179253693 179256255 + >KAJ0215868.1 Lssa3g03367 3367
3 179261473 179263328 + >KAJ0218913.1 Lssa3g03368 3368
3 201393855 201399030 - >KAJ0218108.1 Lssa3g03521 3521
3 201671317 201675037 + >KAJ0215406.1 Lssa3g03524 3524
1 89267861 89279463 - KAD7478696.1 Mimi1g01832 1832
3 87893415 87895297 - PdyAMIRv0_Chr03g0128791 Pdy3g03040 3040
3 87934666 87937603 - PdyAMIRv0_Chr03g0128831 Pdy3g03044 3044
3 87951024 87954576 + PdyAMIRv0_Chr03g0128841 Pdy3g03045 3045
2 105663775 105666310 - PluAMIRv0_Chr02g0362481 Pslu2g14204 14204
2 105679880 105682843 + PluAMIRv0_Chr02g0362501 Pslu2g14206 14206
2 105684162 105684548 - PluAMIRv0_Chr02g0362511 Pslu2g14207 14207
2 105744814 105747722 - PluAMIRv0_Chr02g0362671 Pslu2g14223 14223
2 105780967 105783642 + PluAMIRv0_Chr02g0362691 Pslu2g14225 14225
8 139968486 139978444 - SinAMIRv0_Chr08g0198551 Sain8g02122 2122
8 140105981 140114515 + SinAMIRv0_Chr08g0198561 Sain8g02123 2123
8 140116245 140116604 - SinAMIRv0_Chr08g0198571 Sain8g02124 2124
8 140119633 140124498 - SinAMIRv0_Chr08g0198581 Sain8g02125 2125
8 140142318 140153633 + SinAMIRv0_Chr08g0198591 Sain8g02126 2126
8 140163261 140166629 + SinAMIRv0_Chr08g0198611 Sain8g02128 2128
4 63743497 63746231 - augustus55957.t01 Soca4g03344 3344
4 63770550 63774851 + transfrag37650.t01 Soca4g03345 3345
4 63793497 63796611 - transfrag37648.t01 Soca4g03349 3349
4 63815035 63819210 + transfrag37647.t01 Soca4g03350 3350
11 90083236 90089067 - Streb.11G016260.1 Stre11g01626 1626
5 6227370 6229352 + >KAK1423255.1 Taer5g00726 726
6 51303514 51305924 - TkA06G197160.1 Tako6g02857 2857
6 51313445 51323671 - TkA06G197200.1 Tako6g02858 2858
6 51347795 51351540 + TkA06G197310.1 Tako6g02861 2861
6 51511962 51516578 - TkA06G197960.3 Tako6g02878 2878
6 51776736 51778072 + TkA06G199070.1 Tako6g02883 2883
6 38184447 38193059 - TbA06G063520.1 Tamo6g02430 2430
6 38301559 38305823 - TbA06G063380.1 Tamo6g02437 2437
6 38376637 38380066 + TbA06G063310.1 Tamo6g02438 2438
       
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