Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01320	.	.	.	.	.	.	None	.	.	.	.	.	.	.	Nin5g01716	.	.	.	.	.	.	.	.	.
Eupl14g01321	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01322	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01323	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01324	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01325	Eupl8g00784	.	.	.	.	.	None	.	Busi8g00585	.	.	.	.	.	Nin5g01710	.	.	.	.	.	.	.	.	.
Eupl14g01326	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01327	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01328	.	.	.	.	.	.	None	.	Busi8g00586	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01329	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

First Previous Page 2508 of 2511 Next Last

Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	7930056	7932668	-	BUSI_016067-RA	Busi8g00585	585
8	7920306	7922104	-	BUSI_016065-RA	Busi8g00586	586
8	21953250	21978637	+	evm.model.CTG_451.15	Eupl8g00784	784
14	30432855	30468463	+	evm.model.CTG_394.37	Eupl14g01320	1320
14	30484298	30501945	+	evm.model.CTG_394.36	Eupl14g01321	1321
14	30570014	30586417	+	evm.model.CTG_394.34	Eupl14g01322	1322
14	30594443	30624308	+	evm.model.CTG_394.32	Eupl14g01323	1323
14	30625883	30633035	+	evm.model.CTG_394.31	Eupl14g01324	1324
14	30639140	30643622	+	evm.model.CTG_394.30	Eupl14g01325	1325
14	30690811	30693953	+	evm.model.CTG_394.29	Eupl14g01326	1326
14	30779024	30783862	+	evm.model.CTG_394.26	Eupl14g01327	1327
14	30823779	30828266	+	evm.model.CTG_394.25	Eupl14g01328	1328
14	30831310	30835897	-	evm.model.CTG_394.24	Eupl14g01329	1329
5	34357115	34360081	+	NinS14523.t1	Nin5g01710	1710
5	34435411	34450296	-	NinS14529.t1	Nin5g01716	1716

DecoBrowse