Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01310	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01311	Eupl8g00792	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01312	Eupl8g00791	.	.	.	.	.	None	.	.	.	.	.	.	.	Nin5g01724	.	.	.	.	.	.	.	.	.
Eupl14g01313	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01314	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01315	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01316	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01317	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01318	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01319	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	22311733	22313883	+	evm.model.CTG_451.28	Eupl8g00791	791
8	22437482	22455191	-	evm.model.CTG_451.29	Eupl8g00792	792
14	30117970	30128829	+	evm.model.CTG_394.54.1	Eupl14g01310	1310
14	30178799	30192835	+	evm.model.CTG_394.52	Eupl14g01311	1311
14	30217572	30220224	-	evm.model.CTG_394.51	Eupl14g01312	1312
14	30243315	30268568	-	evm.model.CTG_394.50	Eupl14g01313	1313
14	30286989	30290734	+	evm.model.CTG_394.48	Eupl14g01314	1314
14	30290828	30291187	+	evm.model.CTG_394.47	Eupl14g01315	1315
14	30302488	30305635	+	evm.model.CTG_394.45	Eupl14g01316	1316
14	30324011	30324647	+	evm.model.CTG_394.42	Eupl14g01317	1317
14	30340768	30356236	-	evm.model.CTG_394.41	Eupl14g01318	1318
14	30387592	30388098	-	evm.model.CTG_394.40	Eupl14g01319	1319
5	34629281	34632197	+	NinS14537.t1	Nin5g01724	1724

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