Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01300	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01301	.	.	.	.	.	.	None	.	Busi8g00883	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01302	.	.	.	.	.	.	None	.	Busi8g00555	.	.	.	.	Nin9g02247	.	.	.	.	.	.	.	.	.	.
Eupl14g01303	.	.	.	.	.	.	None	.	Busi8g00565	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01304	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01305	.	.	.	.	.	.	None	.	.	.	.	.	.	Nin9g02251	.	.	.	.	.	.	.	.	.	.
Eupl14g01306	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01307	Eupl8g00794	.	.	.	.	.	None	.	.	.	.	.	.	.	Nin5g01731	.	.	.	.	.	.	.	.	.
Eupl14g01308	Eupl8g00793	.	.	.	.	.	None	.	Busi8g00566	.	.	.	.	.	Nin5g01729	.	.	.	.	.	.	.	.	.
Eupl14g01309	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	7626294	7634227	-	BUSI_016039-RA	Busi8g00555	555
8	7669426	7673174	-	BUSI_016041-RA	Busi8g00565	565
8	7709336	7710964	-	BUSI_016044-RA	Busi8g00566	566
8	13886923	13915731	-	BUSI_016367-RA	Busi8g00883	883
8	22524963	22527572	+	evm.model.CTG_451.33.1	Eupl8g00793	793
8	22565921	22576896	+	evm.model.CTG_451.34	Eupl8g00794	794
14	29857802	29858209	+	evm.model.CTG_394.71	Eupl14g01300	1300
14	29915839	29924853	+	evm.model.CTG_394.68	Eupl14g01301	1301
14	29925796	29945424	-	evm.model.CTG_394.67	Eupl14g01302	1302
14	29958259	29963776	-	evm.model.CTG_394.65	Eupl14g01303	1303
14	29968050	29989852	-	evm.model.CTG_394.64	Eupl14g01304	1304
14	30015435	30018619	-	evm.model.CTG_394.61	Eupl14g01305	1305
14	30054979	30062942	-	evm.model.CTG_394.60	Eupl14g01306	1306
14	30065003	30072743	-	evm.model.CTG_394.58_evm.model.CTG_394.59	Eupl14g01307	1307
14	30079604	30081919	-	evm.model.CTG_394.56	Eupl14g01308	1308
14	30109124	30119074	-	evm.model.CTG_394.55	Eupl14g01309	1309
5	34723384	34725333	-	NinS14542.t1	Nin5g01729	1729
5	34755513	34763913	+	NinS14544.t1	Nin5g01731	1731
9	34270759	34276718	-	NinS26697.t1	Nin9g02247	2247
9	34332919	34336722	+	NinS26701.t1	Nin9g02251	2251

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