Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01290	.	.	.	.	.	.	None	.	Busi8g00554	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01291	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01292	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01293	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01294	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01295	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01296	Eupl8g00805	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01297	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01298	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01299	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	7601273	7610973	-	BUSI_016037-RA	Busi8g00554	554
8	22952675	22997551	+	evm.model.CTG_451.52	Eupl8g00805	805
14	29563235	29597429	-	evm.model.CTG_394.87	Eupl14g01290	1290
14	29649151	29650322	+	evm.model.CTG_394.84	Eupl14g01291	1291
14	29692108	29696425	-	evm.model.CTG_394.80	Eupl14g01292	1292
14	29696540	29700073	+	evm.model.CTG_394.79	Eupl14g01293	1293
14	29700329	29701105	+	evm.model.CTG_394.78	Eupl14g01294	1294
14	29702095	29703378	+	evm.model.CTG_394.77	Eupl14g01295	1295
14	29713499	29754353	-	evm.model.CTG_394.73_evm.model.CTG_394.76	Eupl14g01296	1296
14	29716780	29717820	+	evm.model.CTG_394.75	Eupl14g01297	1297
14	29718062	29718796	+	evm.model.CTG_394.74	Eupl14g01298	1298
14	29816308	29833220	+	evm.model.CTG_394.72	Eupl14g01299	1299

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