Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01280	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01281	Eupl8g00809	.	.	.	.	.	None	.	.	.	.	.	.	.	Nin5g01743	.	.	.	.	.	.	.	.	.
Eupl14g01282	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01283	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01284	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01285	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01286	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01287	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01288	.	.	.	.	.	.	None	.	.	.	.	.	.	.	Nin5g01733	.	.	.	.	.	.	.	.	.
Eupl14g01289	Eupl8g00807	.	.	.	.	.	None	.	Busi8g00553	.	.	.	.	.	Nin5g01732	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	7589253	7599684	+	BUSI_016036-RA	Busi8g00553	553
8	23088497	23114292	-	evm.model.CTG_451.55	Eupl8g00807	807
8	23165270	23171538	+	evm.model.CTG_451.57.1	Eupl8g00809	809
14	29208163	29219482	+	evm.model.CTG_394.103	Eupl14g01280	1280
14	29234422	29240424	+	evm.model.CTG_394.102	Eupl14g01281	1281
14	29335172	29337519	-	evm.model.CTG_394.97	Eupl14g01282	1282
14	29358784	29360002	-	evm.model.CTG_394.95	Eupl14g01283	1283
14	29361838	29362371	-	evm.model.CTG_394.94	Eupl14g01284	1284
14	29377161	29381505	-	evm.model.CTG_394.93	Eupl14g01285	1285
14	29432866	29433309	+	evm.model.CTG_394.92	Eupl14g01286	1286
14	29453903	29458381	-	evm.model.CTG_394.90	Eupl14g01287	1287
14	29501722	29505128	+	evm.model.CTG_394.89	Eupl14g01288	1288
14	29520884	29561784	+	evm.model.CTG_394.88	Eupl14g01289	1289
5	34774052	34788863	-	NinS14545.t1	Nin5g01732	1732
5	34790462	34792578	-	NinS14546.t1	Nin5g01733	1733
5	35141786	35146088	-	NinS14556.t1	Nin5g01743	1743

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