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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00671 . Bial10g01166 Bial22g00768 Dapi4g01686 Dapi20g01620 Hetu1g01580 Hetu2g01355 Hetu3g01381 Amtr02g08712 Smso1g03453 Smso28g00572 . . . . . . Stre1g04164 Mimi16g01907 Hean11g02839 Cobi6g00946 Bial12g02822 Bial24g02667 Dapi4g01686 Dapi31g02163 Hetu32g02413 Hetu31g02403 Hetu33g02322 Amtr07g06052 Smso1g03453 . Taer4g00618 Fro13g01468 Fso12g02032 Ftr6g02434 Fra13g01321 Fli9g01529 Stre1g04164 .
Hean1g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00673 . . . . . Hetu1g01579 Hetu2g01354 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00674 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00675 . . . . . . Hetu2g01348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00677 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00678 Cobi2g02100 . . Dapi4g01690 Dapi20g01623 Hetu1g01568 Hetu2g01340 Hetu3g01378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00679 . Bial10g01172 Bial22g00769 Dapi4g01692 Dapi20g01626 Hetu1g01555 Hetu2g01335 Hetu3g01364 Amtr02g08703 Smso1g03457 Smso28g00569 . . . . . . Stre1g04166 Mimi16g01909 . . . . . . . . . . . . . . . . . . . .
Hean1g00680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
2 168892120 168894269 + AtrifAMIRv0_Chr02g0182991 Amtr02g08703 8703
2 169085863 169089442 - AtrifAMIRv0_Chr02g0183081 Amtr02g08712 8712
7 126822513 126826225 - AtrifAMIRv0_Chr07g0511991 Amtr07g06052 6052
10 11598768 11601428 + g87003.t1 Bial10g01166 1166
10 11621230 11623485 - g86997.t1 Bial10g01172 1172
12 58280682 58284061 + g36021.t1 Bial12g02822 2822
22 7357667 7372153 + g147266.t1 Bial22g00768 768
22 7373748 7375985 - g147265.t1 Bial22g00769 769
24 57412605 57417711 + g68333.t1 Bial24g02667 2667
2 64931546 64933213 + h2tg000016l_1.g5146.t1 Cobi2g02100 2100
6 7624846 7627869 - h2tg000031l_1.g19259.t1 Cobi6g00946 946
4 104309622 104319473 + h2tg000160l.g57271.t1 Dapi4g01686 1686
4 104547535 104549776 - h2tg000160l.g57275.t1 Dapi4g01690 1690
4 104570286 104573133 - h2tg000160l.g57277.t1 Dapi4g01692 1692
20 95899171 95902632 + h2tg000075l.g16990.t1 Dapi20g01620 1620
20 96105603 96106586 - h2tg000075l.g16993.t1 Dapi20g01623 1623
20 96369051 96371891 - h2tg000075l.g16996.t1 Dapi20g01626 1626
31 105861989 105868036 + h2tg000063l.g12248.t1 Dapi31g02163 2163
9 74105624 74108247 + FliAMIRv0_Chr09g0222951 Fli9g01529 1529
13 41511651 41514209 - FraAMIRv0_Chr13g0266291 Fra13g01321 1321
13 24033227 24035475 + FroAMIRv0_Chr13g0236501 Fro13g01468 1468
12 59178878 59181634 + FsoAMIRv0_Chr12g0309961 Fso12g02032 2032
6 91728727 91731964 + FtrAMIRv0_Chr06g0185821 Ftr6g02434 2434
1 34425327 34430028 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007611 Hean1g00671 671
1 34471024 34472140 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007621 Hean1g00672 672
1 34471281 34472424 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007631 Hean1g00673 673
1 34507629 34509028 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007641 Hean1g00674 674
1 34572605 34573987 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007651 Hean1g00675 675
1 34648537 34650241 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007661 Hean1g00676 676
1 34650612 34651097 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007671 Hean1g00677 677
1 34811444 34812771 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007681 Hean1g00678 678
1 34932638 34937093 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007701 Hean1g00679 679
1 34951812 34952707 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007711 Hean1g00680 680
11 132182477 132186391 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0499971 Hean11g02839 2839
1 84906726 84908877 + >Htub.h1tg002297l.g192.t1 Hetu1g01555 1555
1 85235269 85236591 - >Htub.h1tg002297l.g206.t1 Hetu1g01568 1568
1 85825409 85826733 - >Htub.h1tg002297l.g217.t1 Hetu1g01579 1579
1 85828482 85836575 - >Htub.h1tg002297l.g218.t1 Hetu1g01580 1580
2 74503436 74505920 + >Htub.h1tg000330l.g436.t1 Hetu2g01335 1335
2 75243546 75247110 - >Htub.h1tg000330l.g431.t1 Hetu2g01340 1340
2 75599295 75603211 - >Htub.h1tg000330l.g423.t1 Hetu2g01348 1348
2 75882992 75884232 - >Htub.h1tg000330l.g417.t1 Hetu2g01354 1354
2 75885820 75890217 - >Htub.h1tg000330l.g416.t1 Hetu2g01355 1355
3 74173525 74182072 + >Htub.h1tg000150l.g130.t1 Hetu3g01364 1364
3 75049638 75050986 - >Htub.h1tg000150l.g116.t1 Hetu3g01378 1378
3 75353249 75356814 - >Htub.h1tg000150l.g113.t1 Hetu3g01381 1381
31 140346118 140349033 + >Htub.h1tg000896l.g616.t1 Hetu31g02403 2403
32 142080712 142085583 + >Htub.h1tg001182l.g282.t1 Hetu32g02413 2413
33 133429920 133432835 + >Htub.h1tg000530l.g83.t1 Hetu33g02322 2322
16 79477029 79480610 + KAD3337977.1 Mimi16g01907 1907
16 79563989 79571118 - KAD3337979.1 Mimi16g01909 1909
1 117741041 117745213 + KAI3829416.1 Smso1g03453 3453
1 117783154 117785703 - KAI3829420.1 Smso1g03457 3457
28 18915858 18918716 + KAI3682849.1 Smso28g00569 569
28 18953770 18962253 - KAI3682852.1 Smso28g00572 572
1 126872682 126887705 + Streb.1G041640.1 Stre1g04164 4164
1 126897495 126902179 - Streb.1G041660.1 Stre1g04166 4166
4 4761213 4764722 - >KAK1426553.1 Taer4g00618 618
       
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