Hierarchical alignments with the <em>Arctium lappa</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Arctium lappa genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Arctium lappa as a reference, and by comparing homologous gene locus maps and Ks values between Arctium lappa and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 74×31,441 macro-matrices.

Query Sequence

Or, Gene ID

Species

Armi_1	Sain_1	Ceso_1	Cati_1	Ccar_1	Cien_1	Cich_1	Lssa_1	Laca_1	Tako_1	Tamo_1	Pslu_1	Lomi_1	Lomi_2	Enbr_1	Ecan_1	Soca_1	Glco_1	Artr_1	Aary_1	Aary_2	Aann_1	Chma_1	Chmo_1	Chmo_2	Chmo_3	Chla_1	Chna_1	Cind_1	Pdy_1	Cobi_1	Hean_1	Bial_1	Bial_2	Dapi_1	Dapi_2	Hetu_1	Hetu_2	Hetu_3	Amtr_1	Smso_1	Smso_2	Taer_1	Fro_1	Fso_1	Ftr_1	Fra_1	Fli_1	Stre_1	Mimi_1	Cobi_2	Hean_2	Bial_3	Bial_4	Dapi_3	Dapi_4	Hetu_4	Hetu_5	Hetu_6	Amtr_2	Smso_3	Smso_4	Taer_2	Fro_2	Fso_2	Ftr_2	Fra_2	Fli_2	Stre_2	Mimi_2
Armi1g00706	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Armi1g00707	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
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Armi1g00712	Sain12g00584	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
.	.	Ceso2g01497	Cati3g00746	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	16714945	16716321	-	AmiAMIRv0_Chr01g0007061	Armi1g00706	706
1	16733878	16734963	-	AmiAMIRv0_Chr01g0007071	Armi1g00707	707
1	17012718	17013207	-	AmiAMIRv0_Chr01g0007121	Armi1g00712	712
3	8077114	8077880	-	CtAH03T0052700.7	Cati3g00746	746
2	31827320	31827842	-	>KAJ9560996.1	Ceso2g01497	1497
12	13076886	13078008	-	SinAMIRv0_Chr12g0361481	Sain12g00584	584

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