Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl1g00171	Eupl5g00289	Nenu2g03108	Nenu7g00879	.	Tesi11g01055	.	None	.	.	.	Vivi6g00931	.	.	Nin6g01390	.	.	.	.	.	.	.	.	.	.
Eupl1g00172	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00173	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00174	.	.	Nenu7g00877	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00175	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00176	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00177	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00178	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00179	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00180	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	5611315	5632557	-	evm.model.CTG_212.150	Eupl1g00171	171
1	5645660	5661521	-	evm.model.CTG_212.151	Eupl1g00172	172
1	5667905	5671433	-	evm.model.CTG_212.152	Eupl1g00173	173
1	5678032	5678530	-	evm.model.CTG_212.153	Eupl1g00174	174
1	5678734	5682474	-	evm.model.CTG_212.154	Eupl1g00175	175
1	5687163	5692312	+	evm.model.CTG_212.155	Eupl1g00176	176
1	5693187	5696649	+	evm.model.CTG_212.156	Eupl1g00177	177
1	5705845	5707510	+	evm.model.CTG_212.157	Eupl1g00178	178
1	5713624	5714443	+	evm.model.CTG_212.158	Eupl1g00179	179
1	5721970	5725219	+	evm.model.CTG_212.159	Eupl1g00180	180
5	8632251	8650575	-	evm.model.CTG_110.46	Eupl5g00289	289
2	73650215	73664412	+	OF24520.mRNA1	Nenu2g03108	3108
7	18620947	18624605	+	OF20867.mRNA1	Nenu7g00877	877
7	18649163	18654448	+	OF20869.mRNA1	Nenu7g00879	879
6	22756046	22786306	+	NinS16843.t1	Nin6g01390	1390
11	25654095	25675136	-	Tesin11G0109700.1	Tesi11g01055	1055
6	14421551	14429747	-	GSVIVT01037394001	Vivi6g00931	931

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