Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl1g00181	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00182	.	.	Nenu7g00871	Tesi7g01136	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00183	.	.	Nenu7g00870	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00184	Eupl5g00299	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00185	.	.	Nenu7g00869	.	.	.	None	.	.	.	Vivi6g00934	.	.	.	.	.	.	.	Arla3g00700	.	.	.	.	.
Eupl1g00186	Eupl5g00301	.	.	Tesi7g01270	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00187	Eupl5g00302	.	Nenu7g00868	Tesi7g01265	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00188	.	.	Nenu7g00863	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00189	.	.	Nenu7g00858	Tesi7g01262	.	.	None	.	.	.	.	Vivi13g01249	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00190	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
3	40297345	40315496	+	evm.model.000008F.313	Arla3g00700	700
1	5730072	5731713	+	evm.model.CTG_212.160	Eupl1g00181	181
1	5752692	5755029	-	evm.model.CTG_212.161	Eupl1g00182	182
1	5767061	5790899	-	evm.model.CTG_212.162	Eupl1g00183	183
1	5815800	5841889	-	evm.model.CTG_212.164	Eupl1g00184	184
1	5862166	5933767	+	evm.model.CTG_212.166	Eupl1g00185	185
1	5945967	5951110	+	evm.model.CTG_212.167	Eupl1g00186	186
1	6024899	6026033	+	evm.model.CTG_212.169	Eupl1g00187	187
1	6044677	6064929	-	evm.model.CTG_212.171	Eupl1g00188	188
1	6071516	6072192	-	evm.model.CTG_212.172	Eupl1g00189	189
1	6097282	6097891	-	evm.model.CTG_212.173	Eupl1g00190	190
5	8917501	8938024	-	evm.model.CTG_110.59	Eupl5g00299	299
5	8956965	8958670	+	evm.model.CTG_110.61	Eupl5g00301	301
5	8970488	8972149	+	evm.model.CTG_110.62	Eupl5g00302	302
7	17995168	18006845	+	OF00516.mRNA1	Nenu7g00858	858
7	18068210	18079863	+	OF00521.mRNA1	Nenu7g00863	863
7	18322558	18323568	-	OF20858.mRNA1	Nenu7g00868	868
7	18337750	18427648	-	OF20859.mRNA1	Nenu7g00869	869
7	18438060	18472575	+	OF20860.mRNA1	Nenu7g00870	870
7	18485777	18488033	+	OF20861.mRNA1	Nenu7g00871	871
7	32966606	32969045	-	Tesin07G0119800.1	Tesi7g01136	1136
7	39007553	39017296	+	Tesin07G0132500.1	Tesi7g01262	1262
7	39233982	39234989	-	Tesin07G0132800.1	Tesi7g01265	1265
7	39465767	39466774	-	Tesin07G0133300.1	Tesi7g01270	1270
6	14492104	14548745	-	GSVIVT01037391001	Vivi6g00934	934
13	24027379	24029185	+	GSVIVT01001366001	Vivi13g01249	1249

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