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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.


Select Eupl_1 Eupl_2 Nenu_1 Nenu_2 Tesi_1 Tesi_2 Tesi_3 Tesi_4 Busi_1 Busi_2 Vivi_1 Vivi_2 Vivi_3 Nin_1 Nin_2 Nin_3 Arla_1 Arla_2 Arla_3 Arla_4 Arla_5 Arla_6 Arla_7 Arla_8 Arla_9
Eupl14g00930 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00931 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00932 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00933 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00934 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00935 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00936 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00937 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00938 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00939 . . . . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
14 13325099 13326985 - evm.model.CTG_330.4 Eupl14g00930 930
14 13366349 13368558 + evm.model.CTG_330.2.2 Eupl14g00931 931
14 13390314 13392126 - evm.model.CTG_330.1 Eupl14g00932 932
14 13413959 13414378 + evm.model.CTG_520.37 Eupl14g00933 933
14 13416497 13418375 + evm.model.CTG_520.36 Eupl14g00934 934
14 13418895 13419259 + evm.model.CTG_520.35 Eupl14g00935 935
14 13430498 13432383 - evm.model.CTG_520.34 Eupl14g00936 936
14 13436341 13437741 + evm.model.CTG_520.33 Eupl14g00937 937
14 13480900 13483108 + evm.model.CTG_520.31 Eupl14g00938 938
14 13504856 13506673 - evm.model.CTG_520.30 Eupl14g00939 939
       
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