Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g00940	.	Nenu1g00683	.	Tesi1g00371	.	.	.	.	Busi8g00413	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00941	.	Nenu1g00681	.	.	.	Tesi21g00626	.	.	.	.	.	Vivi2g00537	.	.	Nin5g01555	.	.	.	.	.	.	Arla7g00028	.	.
Eupl14g00942	.	Nenu1g00680	.	.	.	Tesi21g00629	.	.	Busi8g00417	.	.	Vivi2g00538	.	.	Nin5g01556	.	.	.	.	.	.	.	Arla11g01290	.
Eupl14g00943	.	Nenu1g00676	.	.	.	.	Tesi22g00310	.	.	Vivi15g00398	.	.	Nin6g00929	.	.	.	Arla11g00195	.	.	.	.	.	.	.
Eupl14g00944	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00945	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00946	.	.	Nenu6g01145	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00947	.	.	.	.	Tesi1g00939	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g00948	.	.	.	.	.	.	.	.	.	.	.	.	.	Nin9g02291	.	.	.	.	.	.	.	.	.	.
Eupl14g00949	.	Nenu1g00674	Nenu6g01144	Tesi1g00372	.	Tesi21g00631	.	.	.	.	.	.	.	.	Nin5g01559	.	.	.	.	.	.	.	.	.

First Previous Page 2470 of 2511 Next Last

Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
7	609367	615019	-	evm.model.000016F.787	Arla7g00028	28
11	5695166	5703022	-	evm.model.000200F.124	Arla11g00195	195
11	74997636	75009932	-	evm.model.000067F.343	Arla11g01290	1290
8	5626749	5629049	-	BUSI_015900-RA	Busi8g00413	413
8	5631274	5652339	-	BUSI_015902-RA	Busi8g00417	417
14	13546894	13552669	-	evm.model.CTG_520.29	Eupl14g00940	940
14	13575788	13604499	+	evm.model.CTG_520.27	Eupl14g00941	941
14	13630766	13664124	-	evm.model.CTG_520.26	Eupl14g00942	942
14	13681103	13771470	+	evm.model.CTG_520.25	Eupl14g00943	943
14	13774909	13782150	+	evm.model.CTG_520.24	Eupl14g00944	944
14	13785071	13785831	+	evm.model.CTG_520.23	Eupl14g00945	945
14	13790576	13797625	+	evm.model.CTG_520.22	Eupl14g00946	946
14	13810585	13811241	+	evm.model.CTG_520.21	Eupl14g00947	947
14	13815109	13835807	-	evm.model.CTG_520.20	Eupl14g00948	948
14	13853463	13858143	+	evm.model.CTG_520.19	Eupl14g00949	949
1	18798604	18801446	-	OF00688.mRNA1	Nenu1g00674	674
1	18889349	18897092	-	OF00690.mRNA1	Nenu1g00676	676
1	18967435	19033774	+	OF00694.mRNA1	Nenu1g00680	680
1	19035709	19105488	-	OF00695.mRNA1	Nenu1g00681	681
1	19157004	19159306	+	OF00697.mRNA1	Nenu1g00683	683
6	39043224	39046934	-	OF11000.mRNA1	Nenu6g01144	1144
6	39061894	39062220	-	OF10999.mRNA1	Nenu6g01145	1145
5	24905466	24912079	+	NinS14368.t1	Nin5g01555	1555
5	24912348	24933702	-	NinS14369.t1	Nin5g01556	1556
5	25189209	25199881	+	NinS14372.t1	Nin5g01559	1559
6	10933650	10936061	-	NinS16382.t1	Nin6g00929	929
9	34617589	34620757	-	NinS26741.t1	Nin9g02291	2291
1	7233910	7237303	-	Tesin01G0039500.1	Tesi1g00371	371
1	7341034	7348042	+	Tesin01G0039600.1	Tesi1g00372	372
1	21492494	21512599	-	Tesin01G0098600.1	Tesi1g00939	939
21	12856602	12881880	+	Tesin21G0067800.1	Tesi21g00626	626
21	12926109	12926889	-	Tesin21G0068100.1	Tesi21g00629	629
21	12957520	12961564	+	Tesin21G0068300.1	Tesi21g00631	631
22	21673425	21702988	-	Tesin22G0033500.1	Tesi22g00310	310
2	5288438	5296580	+	GSVIVT01001320001	Vivi2g00537	537
2	5296956	5326061	-	GSVIVT01001321001	Vivi2g00538	538
15	13812762	13829500	-	GSVIVT01018154001	Vivi15g00398	398

DecoBrowse