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Asteraceae Genomic Research Platform

Gene Search

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Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.


Select Eupl_1 Eupl_2 Nenu_1 Nenu_2 Tesi_1 Tesi_2 Tesi_3 Tesi_4 Busi_1 Busi_2 Vivi_1 Vivi_2 Vivi_3 Nin_1 Nin_2 Nin_3 Arla_1 Arla_2 Arla_3 Arla_4 Arla_5 Arla_6 Arla_7 Arla_8 Arla_9
Eupl14g00950 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00951 . . . Tesi1g00373 . . . . . . . . . . . . . . . . . . . .
Eupl14g00952 . Nenu1g00671 Nenu6g01143 . Tesi1g00936 . Tesi22g00308 . . . . Vivi2g00539 . . Nin5g01568 . . . . . . . . Arla9g01577
Eupl14g00953 . . . . . . . Busi12g00611 . Vivi15g00397 . . Nin6g00932 . . . . Arla5g01024 . . . . . .
Eupl14g00954 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00955 . . Nenu6g01141 Tesi1g00374 . . . . . . . . Nin6g00934 . Nin5g01571 . . . . . . . . .
Eupl14g00956 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g00957 . . Nenu6g01140 Tesi1g00375 . . . . Busi8g00419 . . . . . Nin5g01572 . . . . . . . . .
Eupl14g00958 . Nenu1g00669 Nenu6g01139 . Tesi1g00934 Tesi21g00632 Tesi22g00305 . . Vivi15g00396 . . . . Nin5g01573 . . . . . . . . .
Eupl14g00959 . Nenu1g00666 Nenu6g01138 . Tesi1g00933 Tesi21g00633 Tesi22g00304 . Busi8g00421 Vivi15g00395 . . Nin6g00935 . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
5 27994562 27997066 + evm.model.000213F.112 Arla5g01024 1024
9 55217455 55219884 + evm.model.000048F.317 Arla9g01577 1577
12 29719890 29721923 + BUSI_023161-RA Busi12g00611 611
8 5696688 5706398 + BUSI_015905-RA Busi8g00419 419
8 5722606 5723667 - BUSI_015907-RA Busi8g00421 421
14 13861341 13866011 - evm.model.CTG_520.18 Eupl14g00950 950
14 13866015 13866266 - evm.model.CTG_520.17 Eupl14g00951 951
14 13874545 13876869 + evm.model.CTG_520.16 Eupl14g00952 952
14 13883927 13889017 + evm.model.CTG_520.15.4 Eupl14g00953 953
14 13892263 13909296 + evm.model.CTG_520.14 Eupl14g00954 954
14 13912080 13925862 - evm.model.CTG_520.13 Eupl14g00955 955
14 13936194 13936795 - evm.model.CTG_520.12 Eupl14g00956 956
14 13950345 13994545 + evm.model.CTG_520.10 Eupl14g00957 957
14 13995845 14007926 - evm.model.CTG_520.9 Eupl14g00958 958
14 14049918 14051016 - evm.model.CTG_520.8 Eupl14g00959 959
1 18637471 18638544 + OF00680.mRNA1 Nenu1g00666 666
1 18716138 18727756 + OF00683.mRNA1 Nenu1g00669 669
1 18740550 18743176 - OF00685.mRNA1 Nenu1g00671 671
6 38837557 38838630 + OF11006.mRNA1 Nenu6g01138 1138
6 38886117 38910821 + OF11005.mRNA1 Nenu6g01139 1139
6 38914156 38975829 - OF11004.mRNA1 Nenu6g01140 1140
6 38987187 39004549 + OF11003.mRNA1 Nenu6g01141 1141
6 39020571 39034042 - OF11001.mRNA1 Nenu6g01143 1143
5 25629317 25634127 + NinS14381.t1 Nin5g01568 1568
5 25714820 25726835 - NinS14384.t1 Nin5g01571 1571
5 25799732 25814059 + NinS14385.t1 Nin5g01572 1572
5 25814895 25827597 - NinS14386.t1 Nin5g01573 1573
6 10943503 10944445 + NinS16385.t1 Nin6g00932 932
6 10960197 10970241 - NinS16387.t1 Nin6g00934 934
6 10989034 10990768 - NinS16388.t1 Nin6g00935 935
1 7346056 7358838 - Tesin01G0039700.1 Tesi1g00373 373
1 7360285 7380095 - Tesin01G0039800.1 Tesi1g00374 374
1 7388599 7412948 + Tesin01G0039900.1 Tesi1g00375 375
1 21340511 21341509 + Tesin01G0098000.1 Tesi1g00933 933
1 21388777 21392412 + Tesin01G0098100.1 Tesi1g00934 934
1 21450116 21454831 - Tesin01G0098300.1 Tesi1g00936 936
21 12965436 12974558 - Tesin21G0068400.1 Tesi21g00632 632
21 13008981 13009982 - Tesin21G0068500.1 Tesi21g00633 633
22 21536036 21537001 + Tesin22G0032800.1 Tesi22g00304 304
22 21545928 21556305 - Tesin22G0032900.1 Tesi22g00305 305
22 21628775 21629528 - Tesin22G0033300.1 Tesi22g00308 308
2 5378526 5380976 + GSVIVT01001327001 Vivi2g00539 539
15 13755681 13756927 + GSVIVT01018161001 Vivi15g00395 395
15 13775360 13783657 + GSVIVT01018158001 Vivi15g00396 396
15 13798799 13803908 + GSVIVT01018156001 Vivi15g00397 397
       
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