Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01080	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01081	.	.	.	.	.	.	.	Busi12g00322	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01082	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01083	.	.	.	.	.	.	.	Busi12g00325	.	.	Vivi16g00280	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01084	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01085	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01086	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01087	.	.	.	.	.	.	Tesi22g00270	.	.	.	.	.	.	.	Nin5g01440	.	.	.	.	.	.	.	.	.
Eupl14g01088	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01089	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
12	14993043	14999922	-	BUSI_022872-RA	Busi12g00322	322
12	15176390	15184745	-	BUSI_022876-RA	Busi12g00325	325
14	18821386	18830763	-	evm.model.CTG_374.5	Eupl14g01080	1080
14	18888225	18895676	-	evm.model.CTG_374.10	Eupl14g01081	1081
14	19142725	19143020	-	evm.model.CTG_374.19	Eupl14g01082	1082
14	19268106	19277528	-	evm.model.CTG_374.25	Eupl14g01083	1083
14	19283530	19287031	-	evm.model.CTG_374.26	Eupl14g01084	1084
14	19440277	19448653	+	evm.model.CTG_374.28	Eupl14g01085	1085
14	19509918	19513078	+	evm.model.CTG_374.32.4	Eupl14g01086	1086
14	19524330	19529665	+	evm.model.CTG_374.33	Eupl14g01087	1087
14	19635231	19636220	-	evm.model.CTG_374.35	Eupl14g01088	1088
14	19742657	19748473	+	evm.model.CTG_374.41.1	Eupl14g01089	1089
5	20623923	20625885	+	NinS14253.t1	Nin5g01440	1440
22	20606125	20606978	+	Tesin22G0028900.1	Tesi22g00270	270
16	5831336	5839256	-	GSVIVT01013877001	Vivi16g00280	280

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