Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

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Or, Query Sequence

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Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01220	Eupl8g01281	.	.	.	.	.	Tesi22g00063	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01221	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01222	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01223	.	.	.	.	.	.	.	.	.	.	.	Vivi2g00935	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01224	Eupl8g01319	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01225	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01226	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01227	.	.	.	.	.	.	Tesi22g00031	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01228	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01229	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	33541191	33545744	-	evm.model.CTG_193.293	Eupl8g01281	1281
8	34063396	34064911	-	evm.model.CTG_193.336	Eupl8g01319	1319
14	26986581	26996778	+	evm.model.CTG_64.39	Eupl14g01220	1220
14	27030790	27031125	+	evm.model.CTG_64.40	Eupl14g01221	1221
14	27033933	27056802	+	evm.model.CTG_64.41	Eupl14g01222	1222
14	27084659	27086014	+	evm.model.CTG_64.42	Eupl14g01223	1223
14	27093829	27095172	+	evm.model.CTG_64.44	Eupl14g01224	1224
14	27096548	27096871	+	evm.model.CTG_64.45	Eupl14g01225	1225
14	27096940	27097848	+	evm.model.CTG_64.46	Eupl14g01226	1226
14	27100413	27121664	-	evm.model.CTG_64.47	Eupl14g01227	1227
14	27154977	27254930	+	evm.model.CTG_64.51	Eupl14g01228	1228
14	27259032	27259605	+	evm.model.CTG_64.52	Eupl14g01229	1229
22	3460038	3468577	+	Tesin22G0003200.1	Tesi22g00031	31
22	5403707	5409013	-	Tesin22G0006800.1	Tesi22g00063	63
2	17661210	17662826	-	GSVIVT01036917001	Vivi2g00935	935

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