Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

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Or, Query Sequence

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Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01230	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01231	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01232	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01233	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01234	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01235	Eupl8g01343	.	.	.	.	.	.	.	.	.	.	Vivi2g00946	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01236	Eupl8g01345	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01237	.	.	.	.	.	.	.	.	.	.	.	Vivi2g00949	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01238	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01239	Eupl8g01348	.	.	.	.	.	Tesi22g00021	.	.	.	.	.	.	.	Nin5g01757	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	34400501	34411737	-	evm.model.CTG_193.360	Eupl8g01343	1343
8	34425387	34426032	-	evm.model.CTG_193.361	Eupl8g01345	1345
8	34475611	34510004	+	evm.model.CTG_193.367	Eupl8g01348	1348
14	27281496	27298478	-	evm.model.CTG_64.53.1	Eupl14g01230	1230
14	27312491	27325158	+	evm.model.CTG_64.55	Eupl14g01231	1231
14	27337902	27436011	+	evm.model.CTG_64.58	Eupl14g01232	1232
14	27444950	27459794	-	evm.model.CTG_64.59	Eupl14g01233	1233
14	27463250	27464713	+	evm.model.CTG_64.60	Eupl14g01234	1234
14	27487279	27506308	-	evm.model.CTG_64.62	Eupl14g01235	1235
14	27509696	27510580	-	evm.model.CTG_64.63	Eupl14g01236	1236
14	27513477	27526863	+	evm.model.CTG_64.64	Eupl14g01237	1237
14	27531026	27534321	+	evm.model.CTG_64.65	Eupl14g01238	1238
14	27579602	27628513	+	evm.model.CTG_64.69	Eupl14g01239	1239
5	35561971	35564626	+	NinS14570.t1	Nin5g01757	1757
22	2578726	2635592	-	Tesin22G0002200.1	Tesi22g00021	21
2	17957867	17976378	-	GSVIVT01036901001	Vivi2g00946	946
2	18075928	18088597	+	GSVIVT01036893001	Vivi2g00949	949

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