Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01210	.	.	.	.	.	.	Tesi22g00084	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01211	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01212	.	.	.	.	.	.	.	.	.	.	.	Vivi2g00902	.	.	.	.	.	.	.	.	.	.	Arla11g00754	.
Eupl14g01213	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01214	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01215	.	.	.	.	.	.	.	Busi12g00456	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01216	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01217	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01218	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01219	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
11	55960033	55964954	+	evm.model.000144F.166	Arla11g00754	754
12	20830680	20851985	+	BUSI_023006-RA	Busi12g00456	456
14	26548206	26551009	-	evm.model.CTG_64.17	Eupl14g01210	1210
14	26578639	26615072	-	evm.model.CTG_64.19	Eupl14g01211	1211
14	26618696	26623868	-	evm.model.CTG_64.20	Eupl14g01212	1212
14	26651105	26652505	+	evm.model.CTG_64.22	Eupl14g01213	1213
14	26677468	26698183	-	evm.model.CTG_64.23	Eupl14g01214	1214
14	26707691	26711646	-	evm.model.CTG_64.25	Eupl14g01215	1215
14	26769665	26790454	-	evm.model.CTG_64.31	Eupl14g01216	1216
14	26794086	26794774	-	evm.model.CTG_64.32	Eupl14g01217	1217
14	26806510	26807409	-	evm.model.CTG_64.36	Eupl14g01218	1218
14	26835545	26970082	+	evm.model.CTG_64.38	Eupl14g01219	1219
22	6646982	6649177	+	Tesin22G0008900.1	Tesi22g00084	84
2	16879684	16884544	-	GSVIVT01022810001	Vivi2g00902	902

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