Hierarchical alignments with the <em>Helianthus annuus</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Helianthus annuus genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.

Query Sequence

Or, Gene ID

Species

Hean_1	Cobi_1	Bial_1	Bial_2	Dapi_1	Dapi_2	Hetu_1	Hetu_2	Hetu_3	Amtr_1	Smso_1	Smso_2	Taer_1	Fro_1	Fso_1	Ftr_1	Fra_1	Fli_1	Stre_1	Mimi_1	Hean_2	Cobi_2	Bial_3	Bial_4	Dapi_3	Dapi_4	Hetu_4	Hetu_5	Hetu_6	Amtr_2	Smso_3	Smso_4	Taer_2	Fro_2	Fso_2	Ftr_2	Fra_2	Fli_2	Stre_2	Mimi_2
Hean1g00461	Cobi2g01995	.	.	.	.	.	Hetu2g01627	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00462	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00463	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00464	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00465	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00466	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00467	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00468	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00469	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00470	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	61438065	61441987	+	h2tg000016l_1.g5251.t1	Cobi2g01995	1995
1	15940343	15942090	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0005151	Hean1g00461	461
1	15978362	15978834	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0005161	Hean1g00462	462
1	16163126	16187560	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0005171	Hean1g00463	463
1	16628229	16630267	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0005181	Hean1g00464	464
1	16630726	16631535	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0005191	Hean1g00465	465
1	16654052	16656642	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0005201	Hean1g00466	466
1	16657474	16659374	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0005211	Hean1g00467	467
1	16659700	16661937	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0005221	Hean1g00468	468
1	16659961	16660470	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0005231	Hean1g00469	469
1	16699072	16699317	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0005241	Hean1g00470	470
2	98470163	98471669	+	>Htub.h1tg000347l.g211.t1	Hetu2g01627	1627

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