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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00622 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00623 Cobi2g02064 . Bial22g00744 Dapi4g01647 Dapi20g01571 Hetu1g01629 Hetu2g01404 Hetu3g01425 Amtr02g08812 Smso1g03423 . . Fro14g01084 Fso1g01714 Ftr2g01259 Fra18g01405 Fli3g01040 Stre1g04133 Mimi16g01885 Hean11g02813 Cobi6g00957 . . Dapi4g01647 . Hetu32g02380 Hetu31g02372 Hetu33g02297 Amtr07g06073 . Smso20g01975 . . . . . . Stre1g04133 .
Hean1g00624 . . . . . . Hetu2g01403 Hetu3g01423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00625 Cobi2g02066 Bial10g01144 . Dapi4g01648 Dapi20g01575 Hetu1g01628 . . Amtr02g08811 Smso1g03426 . . . . . . . Stre1g04134 Mimi16g01886 . . . . . . . . . . . . . . . . . . . .
Hean1g00626 . . Bial22g00746 . . . Hetu2g01401 Hetu3g01422 . . . . Fro14g01085 Fso1g01717 Ftr2g01254 Fra18g01449 Fli3g01039 . . . . . . . . . . . . . . . . . . . . . .
Hean1g00627 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00628 Cobi2g02072 . Bial22g00747 . . . Hetu2g01399 Hetu3g01417 Amtr02g08808 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00630 Cobi2g02073 . . . . . . . Amtr02g08799 . . . . . . . . Stre1g04136 . . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
2 171262938 171264363 + AtrifAMIRv0_Chr02g0183951 Amtr02g08799 8799
2 171356869 171358068 + AtrifAMIRv0_Chr02g0184041 Amtr02g08808 8808
2 171386725 171403603 + AtrifAMIRv0_Chr02g0184071 Amtr02g08811 8811
2 171406012 171407950 - AtrifAMIRv0_Chr02g0184081 Amtr02g08812 8812
7 127409343 127411922 + AtrifAMIRv0_Chr07g0512201 Amtr07g06073 6073
10 11424624 11433675 - g87025.t1 Bial10g01144 1144
22 7135102 7137048 + g147290.t1 Bial22g00744 744
22 7146972 7151728 - g147288.t1 Bial22g00746 746
22 7154872 7156143 - g147287.t1 Bial22g00747 747
2 64283735 64285378 + h2tg000016l_1.g5182.t1 Cobi2g02064 2064
2 64310811 64313911 - h2tg000016l_1.g5180.t1 Cobi2g02066 2066
2 64343058 64344317 - h2tg000016l_1.g5174.t1 Cobi2g02072 2072
2 64367178 64368599 - h2tg000016l_1.g5173.t1 Cobi2g02073 2073
6 7686301 7688461 + h2tg000031l_1.g19270.t1 Cobi6g00957 957
4 101869724 101873335 + h2tg000160l.g57232.t1 Dapi4g01647 1647
4 101972332 101977309 - h2tg000160l.g57233.t1 Dapi4g01648 1648
20 93449028 93452639 + h2tg000075l.g16941.t1 Dapi20g01571 1571
20 93549192 93554077 - h2tg000075l.g16945.t1 Dapi20g01575 1575
3 32749579 32752385 + FliAMIRv0_Chr03g0083081 Fli3g01039 1039
3 32759889 32761840 + FliAMIRv0_Chr03g0083091 Fli3g01040 1040
18 53495480 53497395 + FraAMIRv0_Chr18g0356021 Fra18g01405 1405
18 58184740 58185233 - FraAMIRv0_Chr18g0356461 Fra18g01449 1449
14 17182741 17184572 - FroAMIRv0_Chr14g0252381 Fro14g01084 1084
14 17190270 17193094 - FroAMIRv0_Chr14g0252391 Fro14g01085 1085
1 49564642 49566567 - FsoAMIRv0_Chr01g0017131 Fso1g01714 1714
1 49645554 49648395 - FsoAMIRv0_Chr01g0017161 Fso1g01717 1717
2 33442630 33445425 + FtrAMIRv0_Chr02g0041211 Ftr2g01254 1254
2 33748583 33749598 + FtrAMIRv0_Chr02g0041261 Ftr2g01259 1259
1 31869986 31875581 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007031 Hean1g00621 621
1 32021461 32023447 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007041 Hean1g00622 622
1 32124390 32127603 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007051 Hean1g00623 623
1 32167660 32169597 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007061 Hean1g00624 624
1 32172103 32172593 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007071 Hean1g00625 625
1 32176252 32176632 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007081 Hean1g00626 626
1 32193684 32207164 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007091 Hean1g00627 627
1 32250015 32251235 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007101 Hean1g00628 628
1 32253166 32254253 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007111 Hean1g00629 629
1 32255716 32257409 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007121 Hean1g00630 630
11 129936046 129939321 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr11g0499651 Hean11g02813 2813
1 88611427 88617599 + >Htub.h1tg001922l.g353.t1 Hetu1g01628 1628
1 88739538 88742071 - >Htub.h1tg001922l.g354.t1 Hetu1g01629 1629
2 79128157 79129986 + >Htub.h1tg000330l.g368.t1 Hetu2g01399 1399
2 79187567 79191291 + >Htub.h1tg000330l.g366.t1 Hetu2g01401 1401
2 79253506 79257226 + >Htub.h1tg000330l.g364.t1 Hetu2g01403 1403
2 79343802 79346336 - >Htub.h1tg000330l.g363.t1 Hetu2g01404 1404
3 77285113 77287129 + >Htub.h1tg000150l.g75.t1 Hetu3g01417 1417
3 77340641 77342641 + >Htub.h1tg000150l.g70.t1 Hetu3g01422 1422
3 77342688 77346516 + >Htub.h1tg000150l.g69.t1 Hetu3g01423 1423
3 77422985 77425172 - >Htub.h1tg000150l.g66.t1 Hetu3g01425 1425
31 138158757 138161017 - >Htub.h1tg000896l.g585.t1 Hetu31g02372 2372
32 139987759 139990007 - >Htub.h1tg001182l.g315.t1 Hetu32g02380 2380
33 131367537 131369813 - >Htub.h1tg000530l.g108.t1 Hetu33g02297 2297
16 79196420 79199337 + KAD3337955.1 Mimi16g01885 1885
16 79199968 79205137 - KAD3337956.1 Mimi16g01886 1886
1 117236698 117238927 + KAI3829386.1 Smso1g03423 3423
1 117242793 117247928 - KAI3829389.1 Smso1g03426 3426
20 64876944 64877725 - KAI3742971.1 Smso20g01975 1975
1 126442410 126445218 + Streb.1G041330.1 Stre1g04133 4133
1 126445775 126450969 - Streb.1G041340.1 Stre1g04134 4134
1 126461111 126480030 - Streb.1G041360.1 Stre1g04136 4136
       
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