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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Hierarchical alignments with the Helianthus annuus genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.


Select Hean_1 Cobi_1 Bial_1 Bial_2 Dapi_1 Dapi_2 Hetu_1 Hetu_2 Hetu_3 Amtr_1 Smso_1 Smso_2 Taer_1 Fro_1 Fso_1 Ftr_1 Fra_1 Fli_1 Stre_1 Mimi_1 Hean_2 Cobi_2 Bial_3 Bial_4 Dapi_3 Dapi_4 Hetu_4 Hetu_5 Hetu_6 Amtr_2 Smso_3 Smso_4 Taer_2 Fro_2 Fso_2 Ftr_2 Fra_2 Fli_2 Stre_2 Mimi_2
Hean1g00611 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00612 Cobi2g02054 Bial10g01139 Bial22g00739 Dapi4g01642 Dapi20g01566 Hetu1g01633 Hetu2g01416 Hetu3g01433 Amtr02g08830 Smso1g03418 . . . . . . . Stre1g04129 Mimi16g01881 . . . . . . . . . . . . . . . . . . . .
Hean1g00613 Cobi2g02060 Bial10g01140 Bial22g00740 Dapi4g01644 Dapi20g01567 Hetu1g01632 Hetu2g01415 Hetu3g01432 Amtr02g08827 Smso1g03419 . . . . . . . Stre1g04130 Mimi16g01882 . . . . . . . . . . . . . . . . . . . .
Hean1g00614 . . . . . . . . Amtr02g08826 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00615 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00616 Cobi2g02061 Bial10g01142 Bial22g00742 Dapi4g01646 Dapi20g01569 Hetu1g01631 Hetu2g01411 Hetu3g01428 Amtr02g08824 Smso1g03420 . . . . . . . Stre1g04131 Mimi16g01883 . . . . . . . . . . . . . . . . . . . .
Hean1g00617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00619 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Hean1g00620 Cobi2g02062 Bial10g01143 Bial22g00743 . Dapi20g01570 Hetu1g01630 Hetu2g01410 Hetu3g01426 Amtr02g08823 Smso1g03421 Smso28g00596 . . . . . . Stre1g04132 Mimi16g01884 . . . . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
2 171486197 171489213 + AtrifAMIRv0_Chr02g0184191 Amtr02g08823 8823
2 171502223 171506947 - AtrifAMIRv0_Chr02g0184201 Amtr02g08824 8824
2 171626617 171626811 + AtrifAMIRv0_Chr02g0184221 Amtr02g08826 8826
2 171627609 171635597 - AtrifAMIRv0_Chr02g0184231 Amtr02g08827 8827
2 171812030 171812764 - AtrifAMIRv0_Chr02g0184261 Amtr02g08830 8830
10 11367946 11374645 + g87030.t1 Bial10g01139 1139
10 11379928 11383932 + g87029.t1 Bial10g01140 1140
10 11395364 11399647 + g87027.t1 Bial10g01142 1142
10 11401043 11403978 - g87026.t1 Bial10g01143 1143
22 7097730 7104898 + g147295.t1 Bial22g00739 739
22 7108290 7114271 + g147294.t1 Bial22g00740 740
22 7124323 7128570 + g147292.t1 Bial22g00742 742
22 7129573 7131307 - g147291.t1 Bial22g00743 743
2 63951190 63959140 + h2tg000016l_1.g5192.t1 Cobi2g02054 2054
2 64187506 64203439 + h2tg000016l_1.g5186.t1 Cobi2g02060 2060
2 64252245 64256252 + h2tg000016l_1.g5185.t1 Cobi2g02061 2061
2 64257189 64260139 - h2tg000016l_1.g5184.t1 Cobi2g02062 2062
4 101442279 101448435 + h2tg000160l.g57227.t1 Dapi4g01642 1642
4 101638141 101649069 + h2tg000160l.g57229.t1 Dapi4g01644 1644
4 101813510 101818607 + h2tg000160l.g57231.t1 Dapi4g01646 1646
20 93087929 93100332 + h2tg000075l.g16936.t1 Dapi20g01566 1566
20 93222646 93233271 + h2tg000075l.g16937.t1 Dapi20g01567 1567
20 93357087 93362230 + h2tg000075l.g16939.t1 Dapi20g01569 1569
20 93365410 93370240 - h2tg000075l.g16940.t1 Dapi20g01570 1570
1 31553482 31554808 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0006911 Hean1g00611 611
1 31558434 31566701 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0006921 Hean1g00612 612
1 31622274 31628371 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0006931 Hean1g00613 613
1 31670393 31671282 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0006941 Hean1g00614 614
1 31673312 31674260 - gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0006951 Hean1g00615 615
1 31701908 31709211 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0006961 Hean1g00616 616
1 31713262 31715288 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0006971 Hean1g00617 617
1 31715290 31717622 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0006981 Hean1g00618 618
1 31717624 31718855 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0006991 Hean1g00619 619
1 31863515 31868628 + gnl|WGS:MNCJ|mrna.Hean1vXRQr2_Chr01g0007021 Hean1g00620 620
1 88938010 88941505 + >Htub.h1tg001922l.g355.t1 Hetu1g01630 1630
1 89098715 89104695 - >Htub.h1tg001922l.g356.t1 Hetu1g01631 1631
1 89612358 89619450 - >Htub.h1tg001922l.g357.t1 Hetu1g01632 1632
1 89636320 89641787 - >Htub.h1tg001922l.g358.t1 Hetu1g01633 1633
2 79471133 79475944 + >Htub.h1tg000330l.g357.t1 Hetu2g01410 1410
2 79644578 79651481 - >Htub.h1tg000330l.g356.t1 Hetu2g01411 1411
2 80165860 80171505 - >Htub.h1tg000330l.g352.t1 Hetu2g01415 1415
2 80196720 80202189 - >Htub.h1tg000330l.g351.t1 Hetu2g01416 1416
3 77558848 77564000 + >Htub.h1tg000150l.g65.t1 Hetu3g01426 1426
3 77654591 77660976 - >Htub.h1tg000150l.g63.t1 Hetu3g01428 1428
3 78065559 78071419 - >Htub.h1tg000150l.g59.t1 Hetu3g01432 1432
3 78079998 78085459 - >Htub.h1tg000150l.g58.t1 Hetu3g01433 1433
16 79122723 79130099 + KAD3337951.1 Mimi16g01881 1881
16 79146328 79157320 + KAD3337952.1 Mimi16g01882 1882
16 79162368 79168399 + KAD3337953.1 Mimi16g01883 1883
16 79172897 79176293 - KAD3337954.1 Mimi16g01884 1884
1 117089782 117097731 + KAI3829381.1 Smso1g03418 3418
1 117108891 117116860 + KAI3829382.1 Smso1g03419 3419
1 117127583 117132081 + KAI3829383.1 Smso1g03420 3420
1 117174122 117181489 - KAI3829384.1 Smso1g03421 3421
28 20305372 20310788 + KAI3682876.1 Smso28g00596 596
1 126398941 126407113 + Streb.1G041290.1 Stre1g04129 4129
1 126408924 126427258 + Streb.1G041300.1 Stre1g04130 4130
1 126431669 126437361 + Streb.1G041310.1 Stre1g04131 4131
1 126438168 126441571 - Streb.1G041320.1 Stre1g04132 4132
       
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