Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01100	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01101	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01102	.	Nenu1g00546	Nenu6g01040	Tesi1g00403	Tesi1g00883	Tesi21g00711	None	.	Busi8g00510	Vivi15g00315	.	.	Nin6g01067	.	.	Arla13g00413	Arla11g00244	.	.	.	.	.	.	.
Eupl14g01103	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01104	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01105	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01106	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01107	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01108	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01109	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
11	8271309	8276335	-	evm.model.000200F.12	Arla11g00244	244
13	39115412	39120754	-	evm.model.000141F.113	Arla13g00413	413
8	7090960	7094171	+	BUSI_015995-RA	Busi8g00510	510
14	20504207	20506862	-	evm.model.CTG_403.10	Eupl14g01100	1100
14	20508876	20514841	-	evm.model.CTG_403.11	Eupl14g01101	1101
14	20519261	20549622	-	evm.model.CTG_403.12_evm.model.CTG_403.15	Eupl14g01102	1102
14	20660908	20671692	+	evm.model.CTG_403.18	Eupl14g01103	1103
14	20704292	20707509	+	evm.model.CTG_403.24	Eupl14g01104	1104
14	20711254	20712117	+	evm.model.CTG_403.25	Eupl14g01105	1105
14	20712626	20713207	+	evm.model.CTG_403.26	Eupl14g01106	1106
14	20713789	20714070	+	evm.model.CTG_403.27	Eupl14g01107	1107
14	20714304	20714501	+	evm.model.CTG_403.28	Eupl14g01108	1108
14	20720986	20721420	+	evm.model.CTG_403.30	Eupl14g01109	1109
1	15443504	15449537	+	OF00560.mRNA1	Nenu1g00546	546
6	36330889	36337275	+	OF11104.mRNA1	Nenu6g01040	1040
6	13557583	13562915	-	NinS16520.t1	Nin6g01067	1067
1	8027289	8042156	+	Tesin01G0042900.1	Tesi1g00403	403
1	19899460	19910870	+	Tesin01G0093000.1	Tesi1g00883	883
21	15310740	15318318	-	Tesin21G0076700.1	Tesi21g00711	711
15	12130592	12138792	+	GSVIVT01018278001	Vivi15g00315	315

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