Hierarchical alignments with the <em>Helianthus annuus</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Helianthus annuus genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Helianthus annuus as a reference, and by comparing homologous gene locus maps and Ks values between Helianthus annuus and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 40×70, 843 macro-matrices.

Query Sequence

Or, Gene ID

Species

Hean_1	Cobi_1	Bial_1	Bial_2	Dapi_1	Dapi_2	Hetu_1	Hetu_2	Hetu_3	Amtr_1	Smso_1	Smso_2	Taer_1	Fro_1	Fso_1	Ftr_1	Fra_1	Fli_1	Stre_1	Mimi_1	Hean_2	Cobi_2	Bial_3	Bial_4	Dapi_3	Dapi_4	Hetu_4	Hetu_5	Hetu_6	Amtr_2	Smso_3	Smso_4	Taer_2	Fro_2	Fso_2	Ftr_2	Fra_2	Fli_2	Stre_2	Mimi_2
Hean1g00201	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00202	.	.	.	Dapi4g01892	Dapi20g01842	Hetu1g00191	.	Hetu3g00182	.	.	Smso28g00462	.	.	.	.	.	.	.	Mimi16g02145	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00203	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00204	.	.	.	.	.	.	Hetu2g00234	.	Amtr12g00514	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00205	.	.	.	.	.	Hetu1g00195	Hetu2g00235	Hetu3g00183	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00206	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00207	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00208	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00209	.	.	.	Dapi4g01896	.	.	Hetu2g00237	Hetu3g00187	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Hean1g00210	.	.	Bial22g00947	.	Dapi20g01843	.	.	.	Amtr12g00517	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

First Previous Page 21 of 7085 Next Last

Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
12	16160965	16170028	+	AtrifAMIRv0_Chr12g0722461	Amtr12g00514	514
12	16248337	16461746	-	AtrifAMIRv0_Chr12g0722491	Amtr12g00517	517
22	9118073	9126191	-	g147087.t1	Bial22g00947	947
4	117023280	117032402	+	h1tg000193l.g132844.t1	Dapi4g01892	1892
4	117281369	117291746	-	h1tg000193l.g132840.t1	Dapi4g01896	1896
20	108789850	108795795	+	h1tg000169l.g129555.t1	Dapi20g01842	1842
20	108796342	108803897	-	h1tg000169l.g129554.t1	Dapi20g01843	1843
1	5349097	5349684	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0002311	Hean1g00201	201
1	5573058	5574989	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0002331	Hean1g00202	202
1	5576757	5578861	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0002341	Hean1g00203	203
1	5609621	5611774	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0002351	Hean1g00204	204
1	5615471	5615865	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0002361	Hean1g00205	205
1	5638335	5638800	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0002381	Hean1g00206	206
1	5664876	5667794	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0002401	Hean1g00207	207
1	5691538	5692951	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0002411	Hean1g00208	208
1	5698162	5699446	+	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0002421	Hean1g00209	209
1	5735083	5758303	-	gnl\|WGS:MNCJ\|mrna.Hean1vXRQr2_Chr01g0002431	Hean1g00210	210
1	7743236	7751437	+	>Htub.h1tg003050l.g457.t1	Hetu1g00191	191
1	7919797	7920881	+	>Htub.h1tg003050l.g461.t1	Hetu1g00195	195
2	8104933	8113055	+	>Htub.h1tg000710l.g120.t1	Hetu2g00234	234
2	8164077	8174637	+	>Htub.h1tg000710l.g121.t1	Hetu2g00235	235
2	8520817	8528212	+	>Htub.h1tg000710l.g123.t1	Hetu2g00237	237
3	7551379	7553079	+	>Htub.h1tg000727l.g82.t1	Hetu3g00182	182
3	7591717	7592106	+	>Htub.h1tg000727l.g83.t1	Hetu3g00183	183
3	7837277	7845720	+	>Htub.h1tg000727l.g88.t1	Hetu3g00187	187
16	84119264	84127579	+	KAD3338215.1	Mimi16g02145	2145
28	12348389	12351854	-	KAI3682742.1	Smso28g00462	462

DecoBrowse