Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01150	.	Nenu1g00494	.	Tesi1g00422	.	.	None	.	Busi8g01184	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01151	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01152	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01153	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01154	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01155	.	.	Nenu6g00995	Tesi1g00423	.	Tesi21g00739	None	.	Busi8g01179	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01156	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01157	.	.	.	.	.	.	Tesi22g00117	.	Busi8g01174	Vivi15g00296	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01158	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01159	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	18683047	18684495	+	BUSI_016659-RA	Busi8g01174	1174
8	18714429	18721107	-	BUSI_016662-RA	Busi8g01179	1179
8	18982172	18983855	+	BUSI_016669-RA	Busi8g01184	1184
14	24157445	24286263	-	evm.model.CTG_104.8	Eupl14g01150	1150
14	24325933	24329836	+	evm.model.CTG_104.9	Eupl14g01151	1151
14	24331256	24331528	+	evm.model.CTG_104.10	Eupl14g01152	1152
14	24356480	24362221	-	evm.model.CTG_104.11	Eupl14g01153	1153
14	24389670	24393438	-	evm.model.CTG_104.12	Eupl14g01154	1154
14	24406274	24417939	+	evm.model.CTG_104.14	Eupl14g01155	1155
14	24420178	24433047	+	evm.model.CTG_104.15	Eupl14g01156	1156
14	24435333	24436296	-	evm.model.CTG_104.16	Eupl14g01157	1157
14	24450334	24461020	+	evm.model.CTG_104.17_evm.model.CTG_104.19	Eupl14g01158	1158
14	24457749	24459079	+	evm.model.CTG_104.18	Eupl14g01159	1159
1	13720861	13765517	+	OF09796.mRNA1	Nenu1g00494	494
6	35367190	35378379	+	OF11149.mRNA1	Nenu6g00995	995
1	8468079	8488283	-	Tesin01G0045000.1	Tesi1g00422	422
1	8494110	8502764	+	Tesin01G0045100.1	Tesi1g00423	423
21	16384430	16402761	+	Tesin21G0080000.1	Tesi21g00739	739
22	11225405	11257110	-	Tesin22G0012700.1	Tesi22g00117	117
15	11401995	11402840	+	GSVIVT01018305001	Vivi15g00296	296

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