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Asteraceae Genomic Research Platform

Gene Search

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Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.


Select Eupl_1 Eupl_2 Nenu_1 Nenu_2 Tesi_1 Tesi_2 Tesi_3 Tesi_4 Busi_1 Busi_2 Vivi_1 Vivi_2 Vivi_3 Nin_1 Nin_2 Nin_3 Arla_1 Arla_2 Arla_3 Arla_4 Arla_5 Arla_6 Arla_7 Arla_8 Arla_9
Eupl14g01180 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01181 . . . . . . . . . . . . . . Nin5g00123 . . . . . . . . .
Eupl14g01182 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01183 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01184 . . . . . . Tesi22g00235 . . . . . . . . . . . . . . . . .
Eupl14g01185 . . . . . . Tesi22g00237 Busi12g00395 Busi8g01138 . . . . . . . . . . . . . . .
Eupl14g01186 . . . . . Tesi21g00747 Tesi22g00239 Busi12g00404 . . . . . . Nin5g00125 . . . . . . . . .
Eupl14g01187 . . . . Tesi1g00835 . . . . . . . . . . . . . . . . . . .
Eupl14g01188 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01189 Eupl8g00921 Nenu1g00473 Nenu6g00978 Tesi1g00430 Tesi1g00802 . Tesi22g00253 . Busi8g01127 Vivi15g00290 . . . . . . Arla10g00813 . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
10 58887712 58893650 + evm.model.000081F.308 Arla10g00813 813
12 19132377 19134131 + BUSI_022949-RA Busi12g00395 395
12 19160595 19171179 - BUSI_022951-RA Busi12g00404 404
8 17726492 17731050 - BUSI_016614-RA Busi8g01127 1127
8 17813472 17813956 - BUSI_016620-RA Busi8g01138 1138
8 25969160 26017865 - evm.model.CTG_282.81 Eupl8g00921 921
14 25676154 25677328 - evm.model.CTG_104.56 Eupl14g01180 1180
14 25699406 25725439 - evm.model.CTG_104.59 Eupl14g01181 1181
14 25767300 25769460 + evm.model.CTG_104.62 Eupl14g01182 1182
14 25773210 25779509 - evm.model.CTG_104.63 Eupl14g01183 1183
14 25791214 25810775 - evm.model.CTG_104.65 Eupl14g01184 1184
14 25858483 25862809 + evm.model.CTG_104.66 Eupl14g01185 1185
14 25871750 25888076 + evm.model.CTG_104.67 Eupl14g01186 1186
14 25914277 26021369 - evm.model.CTG_104.68.1 Eupl14g01187 1187
14 26049564 26058158 - evm.model.CTG_104.69 Eupl14g01188 1188
14 26075954 26085122 - evm.model.CTG_104.70 Eupl14g01189 1189
1 13196655 13201355 + OF09775.mRNA1 Nenu1g00473 473
6 35038355 35042993 - OF11166.mRNA1 Nenu6g00978 978
5 1154548 1159101 - NinS12936.t1 Nin5g00123 123
5 1176001 1187310 - NinS12938.t1 Nin5g00125 125
1 8618364 8630359 - Tesin01G0045800.1 Tesi1g00430 430
1 17802014 17807512 + Tesin01G0084800.1 Tesi1g00802 802
1 18580644 18587119 - Tesin01G0088100.1 Tesi1g00835 835
21 16658027 16662982 + Tesin21G0081400.1 Tesi21g00747 747
22 19369799 19381824 + Tesin22G0025200.1 Tesi22g00235 235
22 19500375 19506071 + Tesin22G0025400.1 Tesi22g00237 237
22 19544013 19556832 - Tesin22G0025600.1 Tesi22g00239 239
22 20154423 20163430 - Tesin22G0027200.1 Tesi22g00253 253
15 11210850 11216300 - GSVIVT01018314001 Vivi15g00290 290
       
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