Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01190	.	.	.	.	Tesi1g00801	.	Tesi22g00254	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01191	Eupl8g00923	Nenu1g00471	.	.	.	.	Tesi22g00255	.	Busi8g01126	Vivi15g00288	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01192	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01193	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01194	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01195	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01196	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01197	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01198	.	.	.	.	.	.	Tesi22g00116	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01199	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	17758397	17761651	-	BUSI_016616-RA	Busi8g01126	1126
8	26053669	26057754	-	evm.model.CTG_282.83	Eupl8g00923	923
14	26096933	26109638	-	evm.model.CTG_104.71	Eupl14g01190	1190
14	26149664	26151731	-	evm.model.CTG_104.72	Eupl14g01191	1191
14	26152725	26153681	-	evm.model.CTG_104.73	Eupl14g01192	1192
14	26168072	26174934	+	evm.model.CTG_104.75	Eupl14g01193	1193
14	26184678	26202752	+	evm.model.CTG_104.76	Eupl14g01194	1194
14	26203183	26206558	-	evm.model.CTG_104.77	Eupl14g01195	1195
14	26222014	26222948	-	evm.model.CTG_104.78	Eupl14g01196	1196
14	26232345	26253419	+	evm.model.CTG_104.80	Eupl14g01197	1197
14	26255185	26256970	-	evm.model.CTG_104.81	Eupl14g01198	1198
14	26265129	26283043	+	evm.model.CTG_64.1	Eupl14g01199	1199
1	13169958	13174596	+	OF09773.mRNA1	Nenu1g00471	471
1	17788831	17791314	+	Tesin01G0084700.1	Tesi1g00801	801
22	11040563	11084396	-	Tesin22G0012500.1	Tesi22g00116	116
22	20166095	20174026	-	Tesin22G0027300.1	Tesi22g00254	254
22	20189644	20211298	-	Tesin22G0027400.1	Tesi22g00255	255
15	11181032	11185013	+	GSVIVT01018317001	Vivi15g00288	288

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