Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl1g00091	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00092	.	.	.	.	.	.	None	Busi1g02574	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00093	Eupl5g00143	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00094	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00095	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00096	.	.	Nenu7g01075	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00097	.	.	.	.	.	.	None	Busi1g00139	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00098	.	.	.	.	.	.	None	Busi1g02565	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00099	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00100	Eupl5g00150	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	5435739	5440739	-	BUSI_000138-RA	Busi1g00139	139
1	59354147	59363146	+	BUSI_002565-RA	Busi1g02565	2565
1	59709481	59718882	+	BUSI_002574-RA	Busi1g02574	2574
1	2977399	2982813	-	evm.model.CTG_212.37	Eupl1g00091	91
1	3080203	3164371	+	evm.model.CTG_212.38	Eupl1g00092	92
1	3168838	3176493	+	evm.model.CTG_212.39	Eupl1g00093	93
1	3179593	3187682	-	evm.model.CTG_212.40	Eupl1g00094	94
1	3198758	3199318	-	evm.model.CTG_212.41	Eupl1g00095	95
1	3199390	3200064	-	evm.model.CTG_212.42	Eupl1g00096	96
1	3225388	3241561	+	evm.model.CTG_212.43	Eupl1g00097	97
1	3242902	3268082	+	evm.model.CTG_212.44	Eupl1g00098	98
1	3272399	3277470	-	evm.model.CTG_212.45	Eupl1g00099	99
1	3284383	3293609	-	evm.model.CTG_212.46	Eupl1g00100	100
5	3730462	3736992	+	evm.model.CTG_219.38.1	Eupl5g00143	143
5	3852287	3866863	-	evm.model.CTG_219.29	Eupl5g00150	150
7	23693820	23695175	-	OF21065.mRNA1	Nenu7g01075	1075

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