Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl14g01260	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Nin5g00389	.	.	.	.	.	.	.	.	.
Eupl14g01261	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01262	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01263	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01264	.	.	.	.	.	.	Tesi22g00003	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01265	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01266	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01267	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01268	.	.	.	.	.	.	None	.	Busi8g00541	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl14g01269	.	.	.	.	.	.	None	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	7461874	7468072	-	BUSI_016027-RA	Busi8g00541	541
14	28196102	28216209	-	evm.model.CTG_437.14	Eupl14g01260	1260
14	28245906	28267336	+	evm.model.CTG_437.16	Eupl14g01261	1261
14	28267367	28267729	+	evm.model.CTG_437.17	Eupl14g01262	1262
14	28312813	28314490	+	evm.model.CTG_437.21	Eupl14g01263	1263
14	28365692	28395007	+	evm.model.CTG_437.24	Eupl14g01264	1264
14	28412743	28441186	-	evm.model.CTG_437.27.3	Eupl14g01265	1265
14	28435805	28436176	-	evm.model.CTG_437.25	Eupl14g01266	1266
14	28593726	28594512	+	evm.model.CTG_394.126	Eupl14g01267	1267
14	28597622	28602808	-	evm.model.CTG_394.125	Eupl14g01268	1268
14	28611837	28644475	-	evm.model.CTG_394.124	Eupl14g01269	1269
5	4624848	4633668	+	NinS13202.t1	Nin5g00389	389
22	279604	310134	+	Tesin22G0000300.1	Tesi22g00003	3

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