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Asteraceae Genomic Research Platform

Gene Search

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Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We constructed a 25×25,104 macro-matrices.


Select Eupl_1 Eupl_2 Nenu_1 Nenu_2 Tesi_1 Tesi_2 Tesi_3 Tesi_4 Busi_1 Busi_2 Vivi_1 Vivi_2 Vivi_3 Nin_1 Nin_2 Nin_3 Arla_1 Arla_2 Arla_3 Arla_4 Arla_5 Arla_6 Arla_7 Arla_8 Arla_9
Eupl14g01250 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01251 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01252 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01253 Eupl8g01361 . . . . . . . . . . Vivi2g00966 . . . . . . . . . . . Arla9g01535
Eupl14g01254 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01255 Eupl8g01365 . . . . . Tesi22g00016 . . . . Vivi2g00970 . . Nin5g00385 . . . . . . Arla7g00507 . Arla9g01531
Eupl14g01256 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01257 . . . . . . . . . . . Vivi2g00972 . . . . . . . . . . . .
Eupl14g01258 . . . . . . . . . . . . . . . . . . . . . . . .
Eupl14g01259 . . . . . . Tesi22g00011 . . . . . . . . . . . . . . . . .
   
Gene_GFF
Select Chromosome Start End Strand Old_gene Gene Num
7 11515100 11522062 + evm.model.000016F.162 Arla7g00507 507
9 51919147 51931586 - evm.model.000048F.204 Arla9g01531 1531
9 52143866 52147061 + evm.model.000048F.211 Arla9g01535 1535
8 34717757 34724413 - evm.model.CTG_193.383 Eupl8g01361 1361
8 34769573 34787760 + evm.model.CTG_193.387 Eupl8g01365 1365
14 27841527 27848934 + evm.model.CTG_64.84 Eupl14g01250 1250
14 27909343 27909672 + evm.model.CTG_437.1 Eupl14g01251 1251
14 27910964 27911326 + evm.model.CTG_437.2 Eupl14g01252 1252
14 27980280 27987294 - evm.model.CTG_437.5 Eupl14g01253 1253
14 28004800 28072956 + evm.model.CTG_437.6 Eupl14g01254 1254
14 28073820 28095334 + evm.model.CTG_437.7.3 Eupl14g01255 1255
14 28100437 28101861 - evm.model.CTG_437.8 Eupl14g01256 1256
14 28103322 28105097 - evm.model.CTG_437.9 Eupl14g01257 1257
14 28120290 28122299 + evm.model.CTG_437.11 Eupl14g01258 1258
14 28154825 28188458 - evm.model.CTG_437.13 Eupl14g01259 1259
5 4560866 4571096 - NinS13198.t1 Nin5g00385 385
22 814888 832851 + Tesin22G0001100.1 Tesi22g00011 11
22 1181670 1185206 - Tesin22G0001600.1 Tesi22g00016 16
2 18405633 18408786 - GSVIVT01036871001 Vivi2g00966 966
2 18515321 18524865 + GSVIVT01036865001 Vivi2g00970 970
2 18560293 18594852 - GSVIVT01036862001 Vivi2g00972 972
       
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