Hierarchical alignments with the <em>Euptelea pleiosperma</em> genome as reference

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Hierarchical alignments with the Euptelea pleiosperma genome as reference

Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Asteraceae genomes. We used Euptelea pleiosperma as a reference, and by comparing homologous gene locus maps and Ks values between Euptelea pleiosperma and other Asteraceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes.
The relevant gene ids can be obtained from the Asteraceae blast and match under the Tools module. This link is Asteraceae blast and match.

Query Sequence

Or, Gene ID

Species

Eupl_1	Eupl_2	Nenu_1	Nenu_2	Tesi_1	Tesi_2	Tesi_3	Tesi_4	Busi_1	Busi_2	Vivi_1	Vivi_2	Vivi_3	Nin_1	Nin_2	Nin_3	Arla_1	Arla_2	Arla_3	Arla_4	Arla_5	Arla_6	Arla_7	Arla_8	Arla_9
Eupl1g00011	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00012	Eupl5g00030	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00013	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00014	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00015	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00016	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00017	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00018	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00019	Eupl5g00033	.	.	.	.	.	.	.	.	Vivi8g00087	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Eupl1g00020	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

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Gene_GFF

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	665582	682163	-	evm.model.CTG_111.11	Eupl1g00011	11
1	739530	745379	+	evm.model.CTG_111.14.3	Eupl1g00012	12
1	746580	769994	-	evm.model.CTG_111.15	Eupl1g00013	13
1	777332	777551	-	evm.model.CTG_111.16	Eupl1g00014	14
1	782379	784426	-	evm.model.CTG_111.17	Eupl1g00015	15
1	788597	788851	+	evm.model.CTG_111.18	Eupl1g00016	16
1	798237	799539	+	evm.model.CTG_111.19	Eupl1g00017	17
1	802374	803276	+	evm.model.CTG_111.20	Eupl1g00018	18
1	807210	852177	-	evm.model.CTG_111.21	Eupl1g00019	19
1	875698	885315	+	evm.model.CTG_111.23	Eupl1g00020	20
5	592829	613867	+	evm.model.CTG_219.183	Eupl5g00030	30
5	640981	687278	-	evm.model.CTG_219.180	Eupl5g00033	33
8	1804064	1830796	+	GSVIVT01029940001	Vivi8g00087	87

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